Conservation of cofitness between ECD_01084 and ECD_01803 in Escherichia coli BL21

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01084 DUF177 family protein 1.0 ECD_01803 free methionine-(R)-sulfoxide reductase 0.82 6
Escherichia fergusonii Becca 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 0.99 EFB2_02169 Free methionine-R-sulfoxide reductase low > 86
Escherichia coli ECRC62 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD 1.00 BNILDI_15760 msrC L-methionine (R)-S-oxide reductase low > 75
Escherichia coli ECOR27 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD 1.00 NOLOHH_16965 msrC L-methionine (R)-S-oxide reductase low > 75
Escherichia coli ECRC98 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 1.00 JDDGAC_01030 msrC L-methionine (R)-S-oxide reductase low > 86
Escherichia coli BW25113 1.00 b1088 yceD hypothetical protein (NCBI) 0.89 b1832 yebR free methionine-(R)-sulfoxide reductase (RefSeq) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD 0.98 HEPCGN_04855 msrC L-methionine (R)-S-oxide reductase low > 87
Escherichia coli ECRC100 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD 1.00 OKFHMN_26455 msrC L-methionine (R)-S-oxide reductase low > 80
Escherichia coli ECRC99 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD 1.00 KEDOAH_01650 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC102 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD 1.00 NIAGMN_01605 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC101 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD 1.00 MCAODC_18950 msrC L-methionine (R)-S-oxide reductase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD 1.00 OHPLBJKB_01899 Free methionine-R-sulfoxide reductase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p 0.78 GFF2847 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein 0.83 EX28DRAFT_0724 GAF domain-containing protein low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD 0.83 MPMX20_02739 Free methionine-R-sulfoxide reductase low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS11065 hypothetical protein 0.73 BWI76_RS17985 hypothetical protein — —
Rahnella sp. WP5 0.85 EX31_RS24410 23S rRNA accumulation protein YceD 0.60 EX31_RS24870 GAF domain-containing protein low > 89
Erwinia tracheiphila SCR3 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD 0.61 LU632_RS13260 GAF domain-containing protein low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS08625 23S rRNA accumulation protein YceD 0.59 HER17_RS11700 GAF domain-containing protein low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.54 DDA3937_RS11975 GAF domain-containing protein low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD 0.55 DZA65_RS12515 GAF domain-containing protein — —
Dickeya dianthicola 67-19 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD 0.54 HGI48_RS12065 GAF domain-containing protein low > 71
Pantoea sp. MT58 0.79 IAI47_12095 23S rRNA accumulation protein YceD 0.62 IAI47_08695 GAF domain-containing protein — —
Serratia liquefaciens MT49 0.73 IAI46_09765 23S rRNA accumulation protein YceD 0.59 IAI46_10790 GAF domain-containing protein — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_10120 23S rRNA accumulation protein YceD 0.53 CSW01_07525 Free methionine-(R)-sulfoxide reductase — —
Shewanella loihica PV-4 0.44 Shew_1598 hypothetical protein (RefSeq) 0.51 Shew_1800 putative GAF sensor protein (RefSeq) — —
Shewanella oneidensis MR-1 0.44 SO2781 conserved hypothetical protein (NCBI ptt file) 0.50 SO2603 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.44 Sama_1985 hypothetical protein (RefSeq) 0.50 Sama_1583 GAF domain-containing protein (RefSeq) — —
Shewanella sp. ANA-3 0.44 Shewana3_2563 hypothetical protein (RefSeq) 0.50 Shewana3_1776 putative GAF sensor protein (RefSeq) — —
Lysobacter sp. OAE881 0.21 ABIE51_RS13965 YceD family protein 0.41 ABIE51_RS17995 GAF domain-containing protein — —
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.4000.1 COG1399 protein, clustered with ribosomal protein L32p 0.37 Xcc-8004.4532.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 74
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_1758 Predicted metal-binding, possibly nucleic acid-binding protein 0.41 B158DRAFT_1416 GAF domain-containing protein low > 40
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1643 Protein of unknown function DUF177 0.45 Psyr_3610 GAF — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1643 Protein of unknown function DUF177 0.45 Psyr_3610 GAF — —

Not shown: 18 genomes with orthologs for ECD_01084 only; 12 genomes with orthologs for ECD_01803 only