Conservation of cofitness between ECD_00806 and ECD_01310 in Escherichia coli BL21

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 1.0 ECD_01310 stress-induced protein 0.41 21
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 1.00 OHPLBJKB_02349 Universal stress protein E low > 73
Escherichia coli BW25113 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 1.00 b1333 uspE stress-induced protein (NCBI) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 HEPCGN_25920 uspE universal stress protein UspE low > 87
Escherichia coli ECRC99 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 KEDOAH_26525 uspE universal stress protein UspE — —
Escherichia coli ECRC100 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 OKFHMN_02245 uspE universal stress protein UspE low > 80
Escherichia coli ECRC62 1.00 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 BNILDI_18095 uspE universal stress protein UspE low > 75
Escherichia coli ECOR27 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NOLOHH_19945 uspE universal stress protein UspE — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 1.00 ECOLIN_RS08000 universal stress protein UspE — —
Escherichia coli ECRC101 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 MCAODC_16025 uspE universal stress protein UspE low > 87
Escherichia coli ECRC102 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NIAGMN_26415 uspE universal stress protein UspE — —
Escherichia coli ECRC98 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 JDDGAC_04790 uspE universal stress protein UspE low > 86
Escherichia fergusonii Becca 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 1.00 EFB2_02594 Universal stress protein E low > 86
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.94 EX28DRAFT_1542 Universal stress protein UspA and related nucleotide-binding proteins low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.95 MPMX20_02033 Universal stress protein E low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.96 GFF2657 Universal stress protein E low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.93 BWI76_RS16190 universal stress protein UspE low > 92
Pantoea sp. MT58 0.75 IAI47_13090 serine hydrolase 0.84 IAI47_09575 universal stress protein UspE low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS12545 serine hydrolase 0.83 HER17_RS10520 universal stress protein UspE low > 75
Serratia liquefaciens MT49 0.71 IAI46_08285 serine hydrolase 0.85 IAI46_13265 universal stress protein UspE low > 86
Dickeya dadantii 3937 0.68 DDA3937_RS09420 serine hydrolase 0.83 DDA3937_RS10955 universal stress protein UspE low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS09435 serine hydrolase 0.81 HGI48_RS10905 universal stress protein UspE low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.81 DZA65_RS11365 universal stress protein UspE low > 75
Rahnella sp. WP5 0.65 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase 0.83 EX31_RS07205 universal stress protein UspE low > 89
Alteromonas macleodii MIT1002 0.47 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.47 MIT1002_02138 Universal stress protein E — —
Pseudomonas putida KT2440 0.42 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.19 PP_2187 Universal stress protein family low > 96
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.19 PFR28_02374 Universal stress protein E low > 88
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.19 AO356_24400 universal stress protein UspA low > 104
Pseudomonas fluorescens SBW25 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.20 PFLU_RS17010 universal stress protein A low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.20 PFLU_RS17010 universal stress protein A low > 109
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.19 Pf6N2E2_567 Universal stress protein family 7 low > 103
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.20 Pf1N1B4_4566 Universal stress protein family 7 — —
Pseudomonas simiae WCS417 0.41 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.20 PS417_14980 universal stress protein UspA low > 88
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.22 AO353_22950 universal stress protein UspA low > 101
Pseudomonas stutzeri RCH2 0.41 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.21 Psest_2307 Universal stress protein UspA and related nucleotide-binding proteins low > 67
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.18 PfGW456L13_3376 Universal stress protein family 7 — —
Pseudomonas sp. S08-1 0.41 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.22 OH686_03960 Universal stress protein family 7 low > 80
Dinoroseobacter shibae DFL-12 0.22 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.16 Dshi_0929 UspA domain protein (RefSeq) — —

Not shown: 36 genomes with orthologs for ECD_00806 only; 6 genomes with orthologs for ECD_01310 only