Conservation of cofitness between CSW01_11955 and CSW01_19375 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11955 endonuclease 1.0 CSW01_19375 NAD(P)-dependent oxidoreductase 0.55 12
Klebsiella michiganensis M5al 0.67 BWI76_RS19700 deoxyribonuclease IV 0.28 BWI76_RS03315 clavaldehyde dehydrogenase low > 92
Escherichia coli ECRC99 0.67 KEDOAH_04700 nfo deoxyribonuclease IV 0.33 KEDOAH_18665 ydfG oxidoreductase — —
Escherichia fergusonii Becca 0.67 EFB2_01697 Endonuclease 4 0.24 EFB2_02417 NADP-dependent 3-hydroxy acid dehydrogenase YdfG low > 86
Pantoea sp. MT58 0.67 IAI47_06665 deoxyribonuclease IV 0.33 IAI47_19010 SDR family oxidoreductase low > 76
Escherichia coli ECRC98 0.67 JDDGAC_27445 nfo deoxyribonuclease IV 0.33 JDDGAC_12925 ydfG oxidoreductase low > 87
Escherichia coli ECOR38 0.67 HEPCGN_22750 nfo deoxyribonuclease IV 0.23 HEPCGN_26930 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 88
Dickeya dadantii 3937 0.67 DDA3937_RS09250 deoxyribonuclease IV 0.24 DDA3937_RS10695 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 74
Escherichia coli ECRC101 0.67 MCAODC_14535 nfo deoxyribonuclease IV 0.33 MCAODC_28500 ydfG oxidoreductase low > 87
Escherichia coli ECRC100 0.67 OKFHMN_23485 nfo deoxyribonuclease IV 0.33 OKFHMN_09285 ydfG oxidoreductase low > 79
Escherichia coli BW25113 0.67 b2159 nfo endonuclease IV (NCBI) 0.23 b1539 ydfG L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) 0.20 38
Escherichia coli ECOR27 0.67 NOLOHH_15060 nfo deoxyribonuclease IV 0.23 NOLOHH_18640 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS12640 deoxyribonuclease IV 0.24 ECOLIN_RS08810 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG — —
Escherichia coli ECRC102 0.67 NIAGMN_21250 nfo deoxyribonuclease IV 0.33 NIAGMN_07340 ydfG oxidoreductase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01552 Endonuclease 4 0.24 OHPLBJKB_02173 NADP-dependent 3-hydroxy acid dehydrogenase YdfG low > 74
Escherichia coli ECRC62 0.67 BNILDI_13980 nfo deoxyribonuclease IV 0.23 BNILDI_17130 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 75
Escherichia coli BL21 0.67 ECD_02088 endonuclease IV with intrinsic 3'-5' exonuclease activity 0.23 ECD_01498 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase low > 61
Pantoea agglomerans CFBP13505 P0401 0.67 PagCFBP13505_RS00765 deoxyribonuclease IV 0.32 PagCFBP13505_RS07585 SDR family oxidoreductase low > 74
Dickeya dianthicola 67-19 0.66 HGI48_RS09275 deoxyribonuclease IV 0.34 HGI48_RS11895 SDR family oxidoreductase low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF3774 Endonuclease IV (EC 3.1.21.2) 0.24 GFF2497 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) low > 78
Dickeya dianthicola ME23 0.66 DZA65_RS09580 deoxyribonuclease IV 0.25 DZA65_RS11160 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 75
Serratia liquefaciens MT49 0.66 IAI46_17225 deoxyribonuclease IV 0.33 IAI46_24860 SDR family oxidoreductase low > 87
Klebsiella pneumoniae MKP103 0.66 KDGMDA_26655 deoxyribonuclease IV 0.23 KDGMDA_15920 Sulfoacetaldehyde reductase low > 95
Erwinia tracheiphila SCR3 0.65 LU632_RS17305 nfo deoxyribonuclease IV 0.23 LU632_RS11720 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 73
Rahnella sp. WP5 0.65 EX31_RS19060 deoxyribonuclease IV 0.26 EX31_RS07075 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 89
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_25880 nfo deoxyribonuclease IV 0.23 IJEDHG_22840 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 61
Enterobacter asburiae PDN3 0.64 EX28DRAFT_0397 Endonuclease IV (EC 3.1.21.-) 0.32 EX28DRAFT_2392 Short-chain alcohol dehydrogenase of unknown specificity low > 76
Enterobacter sp. TBS_079 0.63 MPMX20_03130 Endonuclease 4 0.37 MPMX20_02125 putative oxidoreductase low > 85
Erwinia amylovora T8 0.63 OLJFJH_11785 deoxyribonuclease IV 0.24 OLJFJH_14250 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG low > 58
Bacteroides thetaiotaomicron VPI-5482 0.62 BT4651 endonuclease IV (NCBI ptt file) 0.25 BT0409 putative short-chain dehydrogenase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.62 BACOVA_05467 apurinic endonuclease (APN1) 0.27 BACOVA_01762 hypothetical protein low > 96
Bacteroides stercoris CC31F 0.61 HMPREF1181_RS13745 deoxyribonuclease IV 0.26 HMPREF1181_RS12415 SDR family oxidoreductase low > 56
Phocaeicola vulgatus CL09T03C04 0.59 HMPREF1058_RS16375 deoxyribonuclease IV 0.27 HMPREF1058_RS16480 SDR family oxidoreductase low > 67
Phocaeicola dorei CL03T12C01 0.59 ABI39_RS12215 deoxyribonuclease IV 0.27 ABI39_RS12400 SDR family oxidoreductase low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU1224 nfo endonuclease IV (TIGR) 0.25 DVU1784 oxidoreductase, short-chain dehydrogenase/reductase family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_0897 apurinic endonuclease Apn1 (RefSeq) 0.21 DvMF_0398 short-chain dehydrogenase/reductase SDR (RefSeq) low > 51
Mycobacterium tuberculosis H37Rv 0.12 Rv0670 Probable endonuclease IV End (endodeoxyribonuclease IV) (apurinase) 0.24 Rv0484c Probable short-chain type oxidoreductase low > 58

Not shown: 4 genomes with orthologs for CSW01_11955 only; 63 genomes with orthologs for CSW01_19375 only