Conservation of cofitness between CSW01_10520 and CSW01_18780 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10520 Aspartate-semialdehyde dehydrogenase 2 1.0 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.55 20
Shewanella amazonensis SB2B 0.72 Sama_2152 aspartate-semialdehyde dehydrogenase (RefSeq) 0.59 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) — —
Shewanella loihica PV-4 0.71 Shew_2308 aspartate-semialdehyde dehydrogenase (RefSeq) 0.57 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) — —
Shewanella sp. ANA-3 0.71 Shewana3_1477 aspartate semialdehyde dehydrogenase (RefSeq) 0.59 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO3070 asd aspartate semialdehyde dehydrogenese (NCBI ptt file) 0.60 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) — —
Rahnella sp. WP5 0.49 EX31_RS19605 aspartate-semialdehyde dehydrogenase 0.51 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 89
Serratia liquefaciens MT49 0.48 IAI46_17845 aspartate-semialdehyde dehydrogenase 0.54 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Dickeya dadantii 3937 0.47 DDA3937_RS14470 aspartate-semialdehyde dehydrogenase 0.53 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Dickeya dianthicola ME23 0.47 DZA65_RS15375 aspartate-semialdehyde dehydrogenase 0.52 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Dickeya dianthicola 67-19 0.46 HGI48_RS14440 aspartate-semialdehyde dehydrogenase 0.52 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS06985 aspartate-semialdehyde dehydrogenase 0.52 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Escherichia fergusonii Becca 0.45 EFB2_01539 USG-1 protein 0.55 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 86
Escherichia coli ECRC62 0.45 BNILDI_13220 usg aspartate-semialdehyde dehydrogenase 0.54 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Escherichia coli ECOR38 0.45 HEPCGN_21870 usg aspartate-semialdehyde dehydrogenase 0.55 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 88
Escherichia coli ECOR27 0.45 NOLOHH_14300 usg aspartate-semialdehyde dehydrogenase 0.55 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 76
Escherichia coli Nissle 1917 0.45 ECOLIN_RS13440 aspartate-semialdehyde dehydrogenase 0.55 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 55
Escherichia coli BW25113 0.45 b2319 usg hypothetical protein (NCBI) 0.54 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_01386 USG-1 protein 0.55 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Escherichia coli ECRC99 0.45 KEDOAH_05530 usg aspartate-semialdehyde dehydrogenase 0.55 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC — —
Escherichia coli BL21 0.45 ECD_02244 putative semialdehyde dehydrogenase 0.54 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC100 0.45 OKFHMN_22665 usg aspartate-semialdehyde dehydrogenase 0.55 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 79
Escherichia coli ECRC98 0.45 JDDGAC_26625 usg aspartate-semialdehyde dehydrogenase 0.54 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC — —
Escherichia coli ECRC102 0.45 NIAGMN_20440 usg aspartate-semialdehyde dehydrogenase 0.55 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 80
Escherichia coli ECRC101 0.45 MCAODC_13705 usg aspartate-semialdehyde dehydrogenase 0.55 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Klebsiella pneumoniae MKP103 0.44 KDGMDA_27220 aspartate-semialdehyde dehydrogenase 0.53 KDGMDA_17730 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 95
Enterobacter sp. TBS_079 0.44 MPMX20_03254 USG-1 protein 0.53 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF1935 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.51 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) low > 78
Klebsiella michiganensis M5al 0.44 BWI76_RS20385 aspartate-semialdehyde dehydrogenase 0.52 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase low > 92
Pantoea agglomerans CFBP13505 P0401 0.44 PagCFBP13505_RS00195 aspartate-semialdehyde dehydrogenase 0.54 PagCFBP13505_RS04310 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Erwinia tracheiphila SCR3 0.43 LU632_RS07820 aspartate-semialdehyde dehydrogenase 0.54 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 73
Erwinia tracheiphila HP pepo 2.2 0.43 IJEDHG_17870 aspartate-semialdehyde dehydrogenase 0.54 IJEDHG_20140 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 61
Pantoea sp. MT58 0.43 IAI47_06240 aspartate-semialdehyde dehydrogenase 0.55 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 76
Parabacteroides merdae CL09T00C40 0.43 HMPREF1078_RS05255 aspartate-semialdehyde dehydrogenase 0.16 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Enterobacter asburiae PDN3 0.42 EX28DRAFT_0285 Aspartate-semialdehyde dehydrogenase 0.53 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB low > 76
Bacteroides ovatus ATCC 8483 0.40 BACOVA_03470 aspartate-semialdehyde dehydrogenase 0.15 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA — —

Not shown: 67 genomes with orthologs for CSW01_10520 only; 0 genomes with orthologs for CSW01_18780 only