Conservation of cofitness between CSW01_04555 and CSW01_17260 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04555 tRNA pseudouridine(65) synthase TruC 1.0 CSW01_17260 noncanonical pyrimidine nucleotidase, YjjG family 0.43 12
Pantoea sp. MT58 0.67 IAI47_04065 tRNA pseudouridine(65) synthase TruC 0.59 IAI47_16360 pyrimidine 5'-nucleotidase low > 76
Pantoea agglomerans CFBP13505 P0401 0.67 PagCFBP13505_RS16905 tRNA pseudouridine(65) synthase TruC 0.57 PagCFBP13505_RS08505 pyrimidine 5'-nucleotidase low > 74
Klebsiella michiganensis M5al 0.66 BWI76_RS22850 tRNA pseudouridine synthase TruC 0.63 BWI76_RS04095 dUMP phosphatase low > 92
Escherichia coli ECRC62 0.65 BNILDI_10595 truC tRNA pseudouridine(65) synthase TruC 0.64 BNILDI_07995 yjjG pyrimidine 5'-nucleotidase low > 75
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2872 Pseudouridylate synthases, 23S RNA-specific 0.62 EX28DRAFT_3582 noncanonical pyrimidine nucleotidase, YjjG family — —
Escherichia coli ECOR27 0.65 NOLOHH_12090 truC tRNA pseudouridine(65) synthase TruC 0.64 NOLOHH_03605 yjjG pyrimidine 5'-nucleotidase low > 76
Escherichia coli ECRC99 0.65 KEDOAH_07920 truC tRNA pseudouridine(65) synthase TruC 0.64 KEDOAH_16860 yjjG pyrimidine 5'-nucleotidase — —
Escherichia coli ECRC100 0.65 OKFHMN_20210 truC tRNA pseudouridine(65) synthase TruC 0.64 OKFHMN_11285 yjjG pyrimidine 5'-nucleotidase low > 79
Escherichia coli ECRC102 0.65 NIAGMN_17980 truC tRNA pseudouridine(65) synthase TruC 0.64 NIAGMN_09135 yjjG pyrimidine 5'-nucleotidase low > 80
Escherichia coli ECRC101 0.65 MCAODC_10735 truC tRNA pseudouridine(65) synthase TruC 0.64 MCAODC_01800 yjjG pyrimidine 5'-nucleotidase low > 87
Escherichia coli ECRC98 0.65 JDDGAC_23875 truC tRNA pseudouridine(65) synthase TruC 0.64 JDDGAC_14880 yjjG pyrimidine 5'-nucleotidase low > 87
Escherichia coli Nissle 1917 0.65 ECOLIN_RS15550 tRNA pseudouridine(65) synthase TruC 0.64 ECOLIN_RS25105 pyrimidine 5'-nucleotidase low > 55
Erwinia amylovora T8 0.65 OLJFJH_09220 tRNA pseudouridine(65) synthase TruC 0.62 OLJFJH_01910 pyrimidine 5'-nucleotidase low > 58
Escherichia coli BL21 0.65 ECD_02636 tRNA(Ile1,Asp) pseudouridine(65) synthase 0.64 ECD_04249 dUMP phosphatase low > 61
Escherichia coli BW25113 0.65 b2791 yqcB tRNA pseudouridine synthase (NCBI) 0.64 b4374 yjjG nucleotidase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00940 tRNA pseudouridine synthase C 0.64 OHPLBJKB_03688 'Pyrimidine 5'-nucleotidase YjjG' transl_table=11 low > 74
Klebsiella pneumoniae MKP103 0.65 KDGMDA_03375 tRNA pseudouridine(65) synthase TruC 0.62 KDGMDA_12365 pyrimidine 5'-nucleotidase low > 95
Escherichia fergusonii Becca 0.65 EFB2_01126 tRNA pseudouridine synthase C 0.64 EFB2_04073 Pyrimidine 5'-nucleotidase YjjG low > 86
Escherichia coli ECOR38 0.65 HEPCGN_19465 truC tRNA pseudouridine(65) synthase TruC 0.64 HEPCGN_09290 yjjG pyrimidine 5'-nucleotidase low > 88
Enterobacter sp. TBS_079 0.64 MPMX20_03661 tRNA pseudouridine synthase C 0.62 MPMX20_00672 Pyrimidine 5'-nucleotidase YjjG low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF4846 tRNA pseudouridine synthase C (EC 4.2.1.70) 0.63 GFF1034 '5'-nucleotidase YjjG (EC 3.1.3.5)' transl_table=11 low > 78
Pectobacterium carotovorum WPP14 0.63 HER17_RS16365 tRNA pseudouridine(65) synthase TruC 0.24 HER17_RS02445 YjjG family noncanonical pyrimidine nucleotidase low > 75
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_17320 truC tRNA pseudouridine(65) synthase TruC 0.60 IJEDHG_05100 yjjG pyrimidine 5'-nucleotidase low > 61
Erwinia tracheiphila SCR3 0.63 LU632_RS06295 truC tRNA pseudouridine(65) synthase TruC 0.60 LU632_RS03765 yjjG pyrimidine 5'-nucleotidase low > 73
Shewanella sp. ANA-3 0.59 Shewana3_2824 tRNA pseudouridine synthase C (RefSeq) 0.65 Shewana3_3797 nucleotidase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.57 Sama_1131 pseudouridylate synthase (RefSeq) 0.60 Sama_0285 nucleotidase (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_2643 pseudouridylate synthase (RefSeq) 0.69 Shew_0363 nucleotidase (RefSeq) low > 60
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_06180 pseudouridylate synthase 0.25 CA264_14185 noncanonical pyrimidine nucleotidase, YjjG family low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS18680 pseudouridine synthase 0.27 ABZR88_RS00760 YjjG family noncanonical pyrimidine nucleotidase — —
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS09310 pseudouridylate synthase 0.22 CA265_RS19470 noncanonical pyrimidine nucleotidase, YjjG family low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3374 Pseudouridylate synthases, 23S RNA-specific 0.21 Echvi_1301 HAD superfamily (subfamily IA) hydrolase, TIGR02254 low > 79
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS02130 RNA pseudouridine synthase 0.18 ABI39_RS09290 YjjG family noncanonical pyrimidine nucleotidase low > 72
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS02790 RNA pseudouridine synthase 0.19 HMPREF1058_RS13740 YjjG family noncanonical pyrimidine nucleotidase low > 67
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS15835 pseudouridine synthase 0.24 HMPREF1078_RS04135 YjjG family noncanonical pyrimidine nucleotidase low > 61

Not shown: 16 genomes with orthologs for CSW01_04555 only; 14 genomes with orthologs for CSW01_17260 only