Conservation of cofitness between CSW01_10145 and CSW01_16835 in Vibrio cholerae E7946 ATCC 55056

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10145 ribonuclease E 1.0 CSW01_16835 catabolite repressor/activator 0.69 4
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3365 Ribonuclease E (EC 3.1.26.12) 0.41 GFF158 Fructose repressor FruR, LacI family — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS08610 ribonuclease E 0.41 HER17_RS03105 catabolite repressor/activator low > 75
Serratia liquefaciens MT49 0.44 IAI46_09750 ribonuclease E 0.42 IAI46_03385 catabolite repressor/activator — —
Enterobacter sp. TBS_079 0.43 MPMX20_01765 Ribonuclease E 0.42 MPMX20_00773 Catabolite repressor/activator 0.30 42
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_02581 Ribonuclease E 0.42 OHPLBJKB_03579 Catabolite repressor/activator low > 74
Rahnella sp. WP5 0.43 EX31_RS24395 ribonuclease E 0.42 EX31_RS03655 catabolite repressor/activator low > 89
Dickeya dianthicola 67-19 0.43 HGI48_RS13225 ribonuclease E 0.42 HGI48_RS18030 catabolite repressor/activator — —
Erwinia tracheiphila HP pepo 2.2 0.43 IJEDHG_00720 rne ribonuclease E 0.43 IJEDHG_05975 cra catabolite repressor/activator low > 61
Escherichia coli Nissle 1917 0.43 ECOLIN_RS06270 ribonuclease E 0.42 ECOLIN_RS00430 catabolite repressor/activator low > 55
Escherichia fergusonii Becca 0.43 EFB2_02890 Ribonuclease E 0.42 EFB2_03967 Catabolite repressor/activator low > 86
Escherichia coli ECRC62 0.43 BNILDI_19310 rne ribonuclease E 0.41 BNILDI_08580 cra catabolite repressor/activator low > 75
Erwinia tracheiphila SCR3 0.43 LU632_RS14860 rne ribonuclease E 0.43 LU632_RS02900 cra catabolite repressor/activator low > 73
Klebsiella pneumoniae MKP103 0.43 KDGMDA_18655 ribonuclease E 0.41 KDGMDA_12935 catabolite repressor/activator low > 95
Escherichia coli BL21 0.43 ECD_01080 endoribonuclease; RNA-binding protein 0.42 ECD_00081 transcriptional repressor-activator for carbon metabolism low > 61
Dickeya dadantii 3937 0.43 DDA3937_RS13160 ribonuclease E 0.42 DDA3937_RS18095 catabolite repressor/activator low > 74
Escherichia coli ECOR38 0.43 HEPCGN_23860 rne ribonuclease E 0.41 HEPCGN_08665 cra catabolite repressor/activator low > 88
Escherichia coli BW25113 0.43 b1084 rne fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) 0.42 b0080 fruR DNA-binding transcriptional dual regulator (NCBI) 0.46 30
Escherichia coli ECOR27 0.43 NOLOHH_21150 rne ribonuclease E 0.41 NOLOHH_03030 cra catabolite repressor/activator low > 76
Pantoea sp. MT58 0.43 IAI47_12110 ribonuclease E 0.41 IAI47_15980 catabolite repressor/activator low > 76
Escherichia coli ECRC100 0.43 OKFHMN_03620 rne ribonuclease E 0.41 OKFHMN_10685 cra catabolite repressor/activator low > 79
Escherichia coli ECRC99 0.43 KEDOAH_24135 rne ribonuclease E 0.41 KEDOAH_17470 cra catabolite repressor/activator — —
Escherichia coli ECRC101 0.43 MCAODC_22980 rne ribonuclease E 0.41 MCAODC_01200 cra catabolite repressor/activator low > 87
Escherichia coli ECRC102 0.43 NIAGMN_24210 rne ribonuclease E 0.41 NIAGMN_08535 cra catabolite repressor/activator low > 80
Escherichia coli ECRC98 0.43 JDDGAC_07280 rne ribonuclease E 0.41 JDDGAC_14280 cra catabolite repressor/activator low > 87
Dickeya dianthicola ME23 0.42 DZA65_RS13700 ribonuclease E 0.42 DZA65_RS19175 catabolite repressor/activator low > 75
Enterobacter asburiae PDN3 0.42 EX28DRAFT_1846 ribonuclease, Rne/Rng family 0.42 EX28DRAFT_3675 transcriptional regulator, LacI family — —
Pantoea agglomerans CFBP13505 P0401 0.41 PagCFBP13505_RS05225 ribonuclease E 0.41 PagCFBP13505_RS13020 catabolite repressor/activator low > 74
Klebsiella michiganensis M5al 0.41 BWI76_RS11040 ribonuclease E 0.42 BWI76_RS04705 DNA-binding transcriptional regulator FruR low > 92
Pseudomonas sp. SVBP6 0.36 COO64_RS05850 rne ribonuclease E 0.45 COO64_RS11270 cra catabolite repressor/activator low > 93
Pseudomonas sp. RS175 0.35 PFR28_03019 Ribonuclease E 0.45 PFR28_00104 Catabolite repressor/activator — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_01410 ribonuclease E 0.45 AO353_05490 transcriptional regulator low > 101
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_04441 Ribonuclease E 0.39 GEMAOFIL_00996 Catabolite repressor/activator low > 96
Pseudomonas fluorescens SBW25 0.35 PFLU_RS23100 ribonuclease E 0.43 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS23100 ribonuclease E 0.43 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_461 Ribonuclease E (EC 3.1.26.12) 0.45 Pf1N1B4_1147 Fructose repressor FruR, LacI family — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_20120 ribonuclease E 0.45 AO356_07340 transcriptional regulator — —
Pseudomonas simiae WCS417 0.35 PS417_21485 ribonuclease E 0.43 PS417_03960 transcriptional regulator — —
Pseudomonas orientalis W4I3 0.35 QF045_RS23565 ribonuclease E 0.43 QF045_RS06935 catabolite repressor/activator low > 93
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5942 Ribonuclease E (EC 3.1.26.12) 0.45 Pf6N2E2_3340 Fructose repressor FruR, LacI family — —

Not shown: 9 genomes with orthologs for CSW01_10145 only; 12 genomes with orthologs for CSW01_16835 only