Conservation of cofitness between CSW01_01710 and CSW01_13525 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 1.0 CSW01_13525 DNA-binding transcriptional regulator CytR 0.59 11
Shewanella amazonensis SB2B 0.37 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) 0.36 Sama_0294 LacI family transcription regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.36 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) 0.21 Shew_1870 LacI family transcription regulator (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.32 MIT1002_03798 Regulator of sigma D 0.39 MIT1002_00363 HTH-type transcriptional repressor CytR low > 70
Serratia liquefaciens MT49 0.32 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.69 IAI46_24560 DNA-binding transcriptional regulator CytR low > 87
Pantoea sp. MT58 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.66 IAI47_00860 DNA-binding transcriptional regulator CytR low > 76
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor 0.66 PagCFBP13505_RS18480 DNA-binding transcriptional regulator CytR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4197 Regulator of sigma D 0.66 GFF2316 Transcriptional (co)regulator CytR low > 78
Escherichia coli ECRC101 0.29 MCAODC_03870 rsd sigma D regulator 0.67 MCAODC_04225 cytR DNA-binding transcriptional regulator CytR low > 87
Escherichia coli ECRC98 0.29 JDDGAC_16995 rsd sigma D regulator 0.67 JDDGAC_17350 cytR DNA-binding transcriptional regulator CytR low > 87
Escherichia coli ECOR27 0.29 NOLOHH_05515 rsd sigma D regulator 0.67 NOLOHH_05870 cytR DNA-binding transcriptional regulator CytR low > 76
Escherichia coli BW25113 0.29 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.67 b3934 cytR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli ECRC100 0.29 OKFHMN_13370 rsd sigma D regulator 0.67 OKFHMN_13725 cytR DNA-binding transcriptional regulator CytR low > 79
Escherichia coli ECRC62 0.29 BNILDI_06010 rsd sigma D regulator 0.67 BNILDI_05660 cytR DNA-binding transcriptional regulator CytR low > 75
Escherichia coli BL21 0.29 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.67 ECD_03819 Anti-activator for CytR-CRP nucleoside utilization regulon low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04055 Regulator of sigma D 0.67 OHPLBJKB_04117 HTH-type transcriptional repressor CytR low > 74
Escherichia coli ECRC102 0.29 NIAGMN_11120 rsd sigma D regulator 0.67 NIAGMN_11480 cytR DNA-binding transcriptional regulator CytR low > 80
Escherichia coli ECRC99 0.29 KEDOAH_14790 rsd sigma D regulator 0.67 KEDOAH_14435 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli ECOR38 0.29 HEPCGN_12005 rsd sigma D regulator 0.67 HEPCGN_12370 cytR DNA-binding transcriptional regulator CytR low > 88
Enterobacter sp. TBS_079 0.29 MPMX20_00218 Regulator of sigma D 0.68 MPMX20_04535 HTH-type transcriptional repressor CytR low > 85
Klebsiella pneumoniae MKP103 0.29 KDGMDA_10045 sigma D regulator 0.67 KDGMDA_09275 DNA-binding transcriptional regulator CytR low > 95
Escherichia coli Nissle 1917 0.29 ECOLIN_RS23045 sigma D regulator 0.67 ECOLIN_RS22650 DNA-binding transcriptional regulator CytR low > 55
Rahnella sp. WP5 0.29 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.70 EX31_RS14230 DNA-binding transcriptional regulator CytR low > 89
Escherichia fergusonii Becca 0.29 EFB2_04616 Regulator of sigma D 0.67 EFB2_04684 HTH-type transcriptional repressor CytR low > 86
Klebsiella michiganensis M5al 0.28 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.68 BWI76_RS00765 DNA-binding transcriptional regulator CytR low > 92
Enterobacter asburiae PDN3 0.27 EX28DRAFT_4537 Regulator of sigma D 0.67 EX28DRAFT_4407 Transcriptional regulators low > 76
Pectobacterium carotovorum WPP14 0.27 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.66 HER17_RS00865 DNA-binding transcriptional regulator CytR low > 75
Erwinia tracheiphila HP pepo 2.2 0.25 IJEDHG_10890 rsd sigma D regulator 0.64 IJEDHG_13000 cytR DNA-binding transcriptional regulator CytR low > 61
Erwinia tracheiphila SCR3 0.25 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.64 LU632_RS19660 cytR DNA-binding transcriptional regulator CytR low > 73
Pseudomonas sp. DMC3 0.25 GFF353 Regulator of sigma D 0.38 GFF1074 HTH-type transcriptional repressor CytR low > 89
Erwinia amylovora T8 0.25 OLJFJH_06745 sigma D regulator 0.64 OLJFJH_06075 DNA-binding transcriptional regulator CytR 0.33 7
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4435 Regulator of sigma D 0.39 Pf6N2E2_322 Transcriptional regulator, LacI family low > 103
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_12810 transcriptional regulator 0.40 AO356_22285 LacI family transcriptional regulator — —
Pseudomonas sp. RS175 0.23 PFR28_04361 Regulator of sigma D 0.40 PFR28_02584 HTH-type transcriptional repressor CytR low > 88
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_2190 Regulator of sigma D 0.38 Pf1N1B4_4095 Transcriptional regulator, LacI family — —
Dickeya dianthicola ME23 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.61 DZA65_RS21490 DNA-binding transcriptional regulator CytR low > 75
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.61 HGI48_RS20445 DNA-binding transcriptional regulator CytR 0.59 20
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.61 DDA3937_RS00930 DNA-binding transcriptional regulator CytR low > 74

Not shown: 21 genomes with orthologs for CSW01_01710 only; 31 genomes with orthologs for CSW01_13525 only