Conservation of cofitness between CSW01_01715 and CSW01_12410 in Vibrio cholerae E7946 ATCC 55056

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01715 NADH pyrophosphatase 1.0 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 5
Dickeya dadantii 3937 0.44 DDA3937_RS01185 NAD(+) diphosphatase 0.44 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Dickeya dianthicola ME23 0.44 DZA65_RS01225 NAD(+) diphosphatase 0.44 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Enterobacter sp. TBS_079 0.43 MPMX20_00219 NADH pyrophosphatase 0.45 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 85
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4538 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 0.45 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA low > 76
Dickeya dianthicola 67-19 0.43 HGI48_RS01180 NAD(+) diphosphatase 0.43 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Escherichia fergusonii Becca 0.43 EFB2_04615 NADH pyrophosphatase 0.45 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Escherichia coli Nissle 1917 0.43 ECOLIN_RS23050 NAD(+) diphosphatase 0.45 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 55
Escherichia coli ECOR38 0.43 HEPCGN_12000 nudC NAD(+) diphosphatase 0.46 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Rahnella sp. WP5 0.43 EX31_RS16825 NAD(+) diphosphatase 0.46 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 89
Escherichia coli BL21 0.43 ECD_03873 NADH pyrophosphatase 0.45 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR27 0.43 NOLOHH_05510 nudC NAD(+) diphosphatase 0.46 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Escherichia coli ECRC62 0.43 BNILDI_06015 nudC NAD(+) diphosphatase 0.45 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Escherichia coli BW25113 0.43 b3996 nudC NADH pyrophosphatase (NCBI) 0.46 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_04054 NADH pyrophosphatase 0.46 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Klebsiella michiganensis M5al 0.42 BWI76_RS01565 NADH pyrophosphatase 0.46 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase low > 92
Escherichia coli ECRC100 0.42 OKFHMN_13365 nudC NAD(+) diphosphatase 0.46 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 79
Escherichia coli ECRC99 0.42 KEDOAH_14795 nudC NAD(+) diphosphatase 0.46 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC98 0.42 JDDGAC_16990 nudC NAD(+) diphosphatase 0.46 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECRC101 0.42 MCAODC_03865 nudC NAD(+) diphosphatase 0.46 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECRC102 0.42 NIAGMN_11115 nudC NAD(+) diphosphatase 0.46 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF4196 NADH pyrophosphatase (EC 3.6.1.22) 0.43 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 78
Pectobacterium carotovorum WPP14 0.41 HER17_RS20370 NAD(+) diphosphatase 0.48 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Klebsiella pneumoniae MKP103 0.41 KDGMDA_10050 NAD(+) diphosphatase 0.46 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 95
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_10895 nudC NAD(+) diphosphatase 0.45 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 61
Erwinia tracheiphila SCR3 0.41 LU632_RS00980 nudC NAD(+) diphosphatase 0.45 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 73
Serratia liquefaciens MT49 0.41 IAI46_01330 NAD(+) diphosphatase 0.48 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Erwinia amylovora T8 0.40 OLJFJH_06750 NAD(+) diphosphatase 0.48 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 58
Pantoea agglomerans CFBP13505 P0401 0.40 PagCFBP13505_RS22610 NAD(+) diphosphatase 0.47 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Pantoea sp. MT58 0.40 IAI47_18075 NAD(+) diphosphatase 0.47 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Pseudomonas sp. S08-1 0.30 OH686_03535 NADH pyrophosphatase , decaps 5'-NAD modified RNA 0.38 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_2453 NUDIX hydrolase 0.38 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_2453 NUDIX hydrolase 0.38 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.28 Psest_2078 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 0.40 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Pseudomonas sp. RS175 0.28 PFR28_02190 NADH pyrophosphatase 0.37 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_4778 NADH pyrophosphatase (EC 3.6.1.22) 0.38 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas sp. SVBP6 0.26 COO64_RS24840 nudC NAD(+) diphosphatase 0.38 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 93
Pseudomonas lactucae CFBP13502 0.26 GEMAOFIL_02823 NADH pyrophosphatase 0.39 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 96
Pseudomonas fluorescens SBW25 0.26 PFLU_RS13555 NAD(+) diphosphatase 0.38 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS13555 NAD(+) diphosphatase 0.38 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas aeruginosa PUPa3 0.25 DQ20_RS54925 nudC;go_function=NAD NAD(+) diphosphatase 0.39 DQ20_RS45015 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 101
Pseudomonas aeruginosa PA14 0.25 IKLFDK_08865 NAD(+) diphosphatase 0.39 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 98
Pseudomonas aeruginosa MRSN321 0.25 DY961_RS20845 nudC;go_function=NAD NAD(+) diphosphatase 0.39 DY961_RS07780 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 100
Pseudomonas simiae WCS417 0.25 PS417_12875 NADH pyrophosphatase 0.39 PS417_20155 23S rRNA methyltransferase low > 88

Not shown: 1 genomes with orthologs for CSW01_01715 only; 73 genomes with orthologs for CSW01_12410 only