| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | 1.0 | CSW01_10320 | | chemotaxis protein CheA | 0.54 | 3 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.53 | PFR28_00855 | | hypothetical protein | low | > 88 |
| Pseudomonas sp. DMC3 | 0.56 | GFF1144 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.37 | GFF2475 | | hypothetical protein | low | > 89 |
| Shewanella oneidensis MR-1 | 0.56 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | 0.53 | SO3207 | | chemotaxis protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.53 | Shewana3_1362 | | CheA signal transduction histidine kinases (RefSeq) | low | > 73 |
| Pseudomonas aeruginosa MRSN321 | 0.54 | DY961_RS11695 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.36 | DY961_RS05620 | | chemotaxis protein CheA | low | > 100 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_4270 | | TRAP transporter, DctM subunit | 0.50 | Psest_1743 | | Chemotaxis protein histidine kinase and related kinases | low | > 67 |
| Pseudomonas aeruginosa PUPa3 | 0.54 | DQ20_RS50405 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.36 | DQ20_RS47170 | | chemotaxis protein CheA | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.54 | IKLFDK_27640 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.36 | IKLFDK_06935 | | two-component sensor | low | > 98 |
| Shewanella amazonensis SB2B | 0.53 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | 0.53 | Sama_2277 | | putative CheA signal transduction histidine kinase (RefSeq) | low | > 62 |
| Pseudomonas segetis P6 | 0.53 | MPMX49_04381 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.49 | MPMX49_03124 | | hypothetical protein | low | > 75 |
| Shewanella loihica PV-4 | 0.52 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | 0.54 | Shew_1386 | | CheA signal transduction histidine kinase (RefSeq) | low | > 60 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.37 | PFLU_RS21645 | | chemotaxis protein CheA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.37 | PFLU_RS21645 | | chemotaxis protein CheA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | 0.37 | PS417_19680 | | chemotaxis protein CheA | — | — |
| Pseudomonas orientalis W4I3 | 0.32 | QF045_RS19040 | | TRAP transporter large permease | 0.50 | QF045_RS21820 | | chemotaxis protein CheA | low | > 93 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.37 | Psyr_3434 | | CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.37 | Psyr_3434 | | CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_23045 | | hypothetical protein | 0.38 | AO356_03715 | | chemotaxis protein CheA | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.38 | Pf6N2E2_2570 | | Signal transduction histidine kinase CheA (EC 2.7.3.-) | low | > 103 |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_03770 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.37 | GEMAOFIL_04135 | | hypothetical protein | — | — |
| Pseudomonas sp. BP01 | 0.31 | JOY50_RS02045 | | TRAP transporter large permease | 0.38 | JOY50_RS00570 | | chemotaxis protein CheA | low | > 84 |
| Pseudomonas putida KT2440 | 0.30 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | 0.38 | PP_4338 | | Chemotaxis histidine kinase CheA | low | > 96 |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_02428 | | Neu5Ac permease | 0.54 | MIT1002_01106 | | Chemotaxis protein CheA | low | > 70 |
Not shown: 25 genomes with orthologs for CSW01_09640 only; 7 genomes with orthologs for CSW01_10320 only