| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12815 | | RNA polymerase sigma-54 factor | 1.0 | CSW01_05195 | | sigma-54-dependent Fis family transcriptional regulator | 0.56 | 9 |
| Pseudomonas sp. DMC3 | 0.57 | GFF1828 | | RNA polymerase sigma-54 factor | 0.31 | GFF4030 | | Transcriptional regulatory protein ZraR | — | — |
| Shewanella sp. ANA-3 | 0.57 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.57 | Shewana3_2016 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 73 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS02020 | | RNA polymerase sigma-54 factor | 0.33 | RS_RS25105 | | sigma-54-dependent Fis family transcriptional regulator | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | 0.31 | QEN71_RS19020 | | sigma-54 dependent transcriptional regulator | low | > 153 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | 0.32 | RALBFv3_RS23315 | | sigma-54-dependent Fis family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS02410 | | RNA polymerase sigma-54 factor | 0.32 | UW163_RS16565 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | 0.32 | RPSI07_RS07835 | | sigma-54-dependent Fis family transcriptional regulator | low | > 81 |
| Methylophilus sp. DMC18 | 0.38 | GFF2777 | | RNA polymerase sigma-54 factor | 0.36 | GFF2815 | | Regulatory protein AtoC | low | > 43 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.34 | GFF3635 | | Nitrogen regulation protein NR(I) | low | > 90 |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | 0.49 | Rru_A2158 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | low | > 58 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | 0.32 | DVU0946 | | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | 0.31 | ABID97_RS11955 | | sigma-54 dependent transcriptional regulator | — | — |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | 0.33 | ABIE41_RS06145 | | sigma-54 dependent transcriptional regulator | low | > 77 |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.55 | AZOBR_RS01060 | | ATPase AAA | low | > 97 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc01139 | | RNA polymerase factor sigma-54 | 0.31 | SMc04011 | | sigma-54-dependent transcription regulator protein | low | > 103 |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | 0.55 | MPMX19_02733 | | Regulatory protein LuxO | low | > 112 |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_000260 | | RNA polymerase factor sigma-54 | 0.32 | TX73_021705 | | sigma-54 dependent transcriptional regulator | low | > 86 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.25 | CA265_RS11005 | | RNA polymerase sigma-54 factor | 0.31 | CA265_RS19085 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Bacteroides ovatus ATCC 8483 | 0.18 | BACOVA_01616 | | RNA polymerase sigma-54 factor | 0.31 | BACOVA_02581 | | Sigma-54 interaction domain protein | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | 0.30 | BT3801 | | rteB, two-component system response regulator (NCBI ptt file) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_3584 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | 0.44 | Dshi_0823 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 64 |
Not shown: 85 genomes with orthologs for CSW01_12815 only; 0 genomes with orthologs for CSW01_05195 only