Conservation of cofitness between CSW01_08435 and CSW01_03155 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08435 phage shock protein PspA 1.0 CSW01_03155 RNA polymerase-binding transcription factor DksA 0.59 11
Serratia liquefaciens MT49 0.59 IAI46_13500 phage shock protein PspA 0.86 IAI46_21210 RNA polymerase-binding protein DksA low > 87
Rahnella sp. WP5 0.59 EX31_RS15685 phage shock protein PspA 0.86 EX31_RS03250 RNA polymerase-binding protein DksA low > 89
Enterobacter sp. TBS_079 0.59 MPMX20_02472 Phage shock protein A 0.86 MPMX20_00831 RNA polymerase-binding transcription factor DksA low > 85
Dickeya dadantii 3937 0.59 DDA3937_RS12425 phage shock protein PspA 0.86 DDA3937_RS15935 RNA polymerase-binding protein DksA — —
Dickeya dianthicola ME23 0.58 DZA65_RS12945 phage shock protein PspA 0.85 DZA65_RS17135 RNA polymerase-binding protein DksA — —
Enterobacter asburiae PDN3 0.58 EX28DRAFT_0976 phage shock protein A (PspA) family protein 0.86 EX28DRAFT_3734 transcriptional regulator, TraR/DksA family — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF2686 Phage shock protein A 0.86 GFF87 C4-type zinc finger protein, DksA/TraR family low > 78
Dickeya dianthicola 67-19 0.58 HGI48_RS12495 phage shock protein PspA 0.85 HGI48_RS16050 RNA polymerase-binding protein DksA low > 71
Escherichia coli BW25113 0.58 b1304 pspA regulatory protein for phage-shock-protein operon (NCBI) 0.86 b0145 dksA DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) low > 76
Escherichia coli ECRC100 0.58 OKFHMN_02410 pspA phage shock protein PspA 0.86 OKFHMN_10345 dksA RNA polymerase-binding protein DksA low > 79
Escherichia coli ECOR38 0.58 HEPCGN_25790 pspA phage shock protein PspA 0.86 HEPCGN_08295 dksA RNA polymerase-binding protein DksA low > 88
Escherichia coli ECRC98 0.58 JDDGAC_04955 pspA phage shock protein PspA 0.86 JDDGAC_13940 dksA RNA polymerase-binding protein DksA low > 87
Escherichia coli ECRC102 0.58 NIAGMN_26580 pspA phage shock protein PspA 0.86 NIAGMN_08195 dksA RNA polymerase-binding protein DksA low > 80
Escherichia coli ECRC62 0.58 BNILDI_18245 pspA phage shock protein PspA 0.86 BNILDI_08980 dksA RNA polymerase-binding protein DksA low > 75
Escherichia coli ECRC99 0.58 KEDOAH_26365 pspA phage shock protein PspA 0.86 KEDOAH_17810 dksA RNA polymerase-binding protein DksA — —
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13516_RS09555 pspA phage shock protein PspA 0.85 PagCFBP13516_RS15950 dksA RNA polymerase-binding protein DksA low > 80
Escherichia coli ECOR27 0.58 NOLOHH_20095 pspA phage shock protein PspA 0.86 NOLOHH_02690 dksA RNA polymerase-binding protein DksA low > 75
Pantoea sp. MT58 0.58 IAI47_09395 phage shock protein PspA 0.85 IAI47_15635 RNA polymerase-binding protein DksA low > 76
Escherichia coli BL21 0.58 ECD_01281 regulatory protein for phage-shock-protein operon 0.86 ECD_00144 transcriptional regulator of rRNA transcription; DnaK suppressor protein — —
Escherichia coli ECRC101 0.58 MCAODC_15860 pspA phage shock protein PspA 0.86 MCAODC_00860 dksA RNA polymerase-binding protein DksA low > 87
Klebsiella michiganensis M5al 0.58 BWI76_RS12450 phage shock protein PspA 0.84 BWI76_RS05015 transcriptional regulator low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_02378 Phage shock protein A 0.86 OHPLBJKB_03517 RNA polymerase-binding transcription factor DksA low > 74
Klebsiella pneumoniae MRSN742743 0.58 GJGHJB_02827 pspA phage shock protein PspA 0.86 GJGHJB_04137 dksA RNA polymerase-binding protein DksA — —
Klebsiella pneumoniae MKP103 0.58 KDGMDA_19920 phage shock protein PspA 0.86 KDGMDA_13270 RNA polymerase-binding protein DksA — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS09520 phage shock protein PspA 0.83 HER17_RS05580 RNA polymerase-binding protein DksA low > 75
Escherichia fergusonii Becca 0.57 EFB2_02623 Phage shock protein A 0.86 EFB2_03899 RNA polymerase-binding transcription factor DksA low > 86
Erwinia amylovora T8 0.56 OLJFJH_13675 phage shock protein PspA 0.86 OLJFJH_00765 RNA polymerase-binding protein DksA — —
Erwinia tracheiphila HP pepo 2.2 0.55 IJEDHG_23020 pspA phage shock protein PspA 0.86 IJEDHG_15060 dksA RNA polymerase-binding protein DksA — —
Erwinia tracheiphila SCR3 0.55 LU632_RS11560 pspA phage shock protein PspA 0.86 LU632_RS20080 dksA RNA polymerase-binding protein DksA — —
Shewanella oneidensis MR-1 0.53 SO1807 pspA phage shock protein A (NCBI ptt file) 0.83 SO0874 dksA DnaK suppressor protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.53 Shewana3_2648 phage shock protein A, PspA (RefSeq) 0.82 Shewana3_3404 TraR/DksA family transcriptional regulator (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_1237 phage shock protein A (RefSeq) 0.82 Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_2496 phage shock protein A, PspA (RefSeq) 0.83 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01143 Phage shock protein A 0.70 MIT1002_03690 DnaK suppressor protein low > 70
Rhodospirillum rubrum S1H 0.45 Rru_A1218 phage shock protein A, PspA (NCBI) 0.28 Rru_A2847 Transcriptional regulators, TraR/DksA family (NCBI) low > 58
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_4147 phage shock protein A (PspA) family protein 0.32 Ga0059261_0274 transcriptional regulator, TraR/DksA family — —
Sphingobium sp. HT1-2 0.40 GFF987 Phage shock protein A @ Suppressor of sigma54-dependent transcription, PspA-like 0.33 GFF2254 DksA family protein PA5536 (no Zn-finger) low > 95

Not shown: 5 genomes with orthologs for CSW01_08435 only; 38 genomes with orthologs for CSW01_03155 only