Conservation of cofitness between CSW01_04980 and CSW01_02815 in Vibrio cholerae E7946 ATCC 55056

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04980 NfeD family protein 1.0 CSW01_02815 tRNA pseudouridine(13) synthase TruD 0.50 1
Pectobacterium carotovorum WPP14 0.37 HER17_RS15615 NfeD family protein 0.36 HER17_RS04335 tRNA pseudouridine(13) synthase TruD low > 75
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4489 Putative activity regulator of membrane protease YbbK 0.32 Pf6N2E2_3041 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 103
Pseudomonas simiae WCS417 0.35 PS417_27230 membrane protein implicated in regulation of membrane protease activity 0.32 PS417_06345 pseudouridine synthase low > 88
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_13050 hypothetical protein 0.32 AO356_05905 pseudouridine synthase low > 104
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_05585 Inner membrane protein YbbJ 0.31 GEMAOFIL_01439 tRNA pseudouridine synthase D low > 96
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_906 Putative activity regulator of membrane protease YbbK 0.32 PfGW456L13_4679 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 87
Pseudomonas fluorescens SBW25 0.34 PFLU_RS28890 NfeD family protein 0.32 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS28890 NfeD family protein 0.32 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD low > 109
Pseudomonas sp. S08-1 0.33 OH686_11150 Putative activity regulator of membrane protease YbbK 0.29 OH686_18165 tRNA pseudouridine(13) synthase low > 80
Escherichia coli ECRC98 0.33 JDDGAC_11650 ybbJ Inner membrane protein YbbJ 0.36 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD low > 87
Escherichia coli ECRC100 0.33 OKFHMN_08005 ybbJ Inner membrane protein YbbJ 0.36 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD — —
Escherichia coli ECRC101 0.33 MCAODC_27220 ybbJ Inner membrane protein YbbJ 0.36 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD low > 87
Escherichia coli ECRC99 0.33 KEDOAH_19965 ybbJ Inner membrane protein YbbJ 0.36 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD — —
Escherichia coli Nissle 1917 0.33 ECOLIN_RS02890 NfeD family protein 0.36 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD — —
Escherichia coli ECRC102 0.33 NIAGMN_06055 ybbJ Inner membrane protein YbbJ 0.36 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD low > 80
Escherichia fergusonii Becca 0.33 EFB2_03567 Inner membrane protein YbbJ 0.36 EFB2_01165 tRNA pseudouridine synthase D low > 86
Pseudomonas segetis P6 0.33 MPMX49_04478 Inner membrane protein YbbJ 0.31 MPMX49_03433 tRNA pseudouridine synthase D low > 75
Enterobacter asburiae PDN3 0.33 EX28DRAFT_2472 Membrane protein implicated in regulation of membrane protease activity 0.36 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family low > 76
Dickeya dianthicola 67-19 0.33 HGI48_RS05900 NfeD family protein 0.37 HGI48_RS16960 tRNA pseudouridine(13) synthase TruD low > 71
Dickeya dianthicola ME23 0.33 DZA65_RS06235 NfeD family protein 0.37 DZA65_RS18035 tRNA pseudouridine(13) synthase TruD low > 75
Escherichia coli ECOR38 0.32 HEPCGN_06640 ybbJ Inner membrane protein YbbJ 0.36 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD low > 88
Escherichia coli ECOR27 0.32 NOLOHH_00995 ybbJ Inner membrane protein YbbJ 0.36 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD low > 76
Escherichia coli ECRC62 0.32 BNILDI_22415 ybbJ Inner membrane protein YbbJ 0.36 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03186 Inner membrane protein YbbJ 0.36 OHPLBJKB_00988 tRNA pseudouridine synthase D low > 74
Escherichia coli BW25113 0.32 b0488 ybbJ conserved inner membrane protein (RefSeq) 0.36 b2745 truD tRNA pseudouridine synthase D (NCBI) low > 76
Dickeya dadantii 3937 0.32 DDA3937_RS05855 NfeD family protein 0.38 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD low > 74
Escherichia coli BL21 0.32 ECD_00439 inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX 0.36 ECD_02595 tRNA(Glu) pseudouridine(13) synthase low > 61
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0708 Membrane protein implicated in regulation of membrane protease activity 0.24 B158DRAFT_2295 Uncharacterized conserved protein low > 40
Klebsiella michiganensis M5al 0.32 BWI76_RS06915 membrane protein 0.35 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD 0.19 5
Klebsiella pneumoniae MKP103 0.32 KDGMDA_14955 NfeD-like C-terminal partner-binding 0.36 KDGMDA_03240 tRNA pseudouridine(13) synthase TruD — —
Serratia liquefaciens MT49 0.32 IAI46_05320 NfeD family protein 0.39 IAI46_03765 tRNA pseudouridine(13) synthase TruD low > 87
Pseudomonas orientalis W4I3 0.32 QF045_RS01605 NfeD family protein 0.31 QF045_RS09190 tRNA pseudouridine(13) synthase TruD low > 93
Enterobacter sp. TBS_079 0.31 MPMX20_01086 Inner membrane protein YbbJ 0.34 MPMX20_03631 tRNA pseudouridine synthase D low > 85
Pantoea agglomerans CFBP13505 P0401 0.30 PagCFBP13505_RS10810 NfeD family protein 0.34 PagCFBP13505_RS16750 tRNA pseudouridine(13) synthase TruD low > 74
Rahnella sp. WP5 0.29 EX31_RS22585 NfeD family protein 0.37 EX31_RS07845 tRNA pseudouridine(13) synthase TruD low > 89
Pantoea sp. MT58 0.29 IAI47_14390 NfeD family protein 0.35 IAI47_04215 tRNA pseudouridine(13) synthase TruD low > 76
Erwinia amylovora T8 0.28 OLJFJH_17695 NfeD-like C-terminal partner-binding 0.37 OLJFJH_09360 tRNA pseudouridine(13) synthase TruD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF4406 Putative activity regulator of membrane protease YbbK 0.36 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) low > 78
Erwinia tracheiphila SCR3 0.25 LU632_RS15285 NfeD family protein 0.35 LU632_RS06460 truD tRNA pseudouridine(13) synthase TruD low > 73
Pseudomonas aeruginosa PUPa3 0.24 DQ20_RS50190 NfeD family protein 0.31 DQ20_RS42280 truD;go_function=RNA tRNA pseudouridine(13) synthase TruD low > 101
Pseudomonas aeruginosa MRSN321 0.24 DY961_RS11925 NfeD family protein 0.31 DY961_RS14845 truD;go_function=RNA tRNA pseudouridine(13) synthase TruD low > 100
Erwinia tracheiphila HP pepo 2.2 0.24 IJEDHG_01060 NfeD-like C-terminal partner-binding 0.35 IJEDHG_17480 truD tRNA pseudouridine(13) synthase TruD low > 61
Pseudomonas aeruginosa PA14 0.24 IKLFDK_27415 NfeD family protein 0.31 IKLFDK_18515 tRNA pseudouridine(13) synthase TruD low > 98
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS10540 NfeD family protein 0.30 ABZR86_RS06605 tRNA pseudouridine(13) synthase TruD low > 74

Not shown: 11 genomes with orthologs for CSW01_04980 only; 22 genomes with orthologs for CSW01_02815 only