| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECRC62 | 1.0 | BNILDI_10480 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 1.0 | BNILDI_20215 | ldtD | L,D-transpeptidase | 0.76 | 11 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11975 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 1.00 | NOLOHH_21960 | ldtD | L,D-transpeptidase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00919 | | tRNA threonylcarbamoyladenosine dehydratase | 1.00 | OHPLBJKB_02742 | | hypothetical protein | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2812 | ygdL | hypothetical protein (NCBI) | 1.00 | b0925 | ycbB | predicted carboxypeptidase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_19350 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | HEPCGN_23125 | ldtD | L,D-transpeptidase | low | > 87 |
| Escherichia coli BL21 | 1.00 | ECD_02663 | | tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA | 1.00 | ECD_00929 | | murein L,D-transpeptidase | low | > 61 |
| Escherichia fergusonii Becca | 0.99 | EFB2_01105 | | tRNA threonylcarbamoyladenosine dehydratase | 1.00 | EFB2_03139 | | putative L,D-transpeptidase YcbB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15670 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | ECOLIN_RS04895 | | L,D-transpeptidase | low | > 55 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_08035 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | KEDOAH_22335 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli ECRC102 | 0.98 | NIAGMN_17865 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | NIAGMN_03120 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli ECRC101 | 0.98 | MCAODC_10620 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | MCAODC_24790 | ldtD | L,D-transpeptidase | low | > 87 |
| Escherichia coli ECRC100 | 0.98 | OKFHMN_20095 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | OKFHMN_05400 | ldtD | L,D-transpeptidase | low | > 80 |
| Escherichia coli ECRC98 | 0.98 | JDDGAC_23760 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.99 | JDDGAC_09010 | ldtD | L,D-transpeptidase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.95 | GFF4870 | | CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway | 0.84 | GFF3682 | | L,D-transpeptidase YcbB | low | > 78 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_03675 | | tRNA threonylcarbamoyladenosine dehydratase | 0.77 | MPMX20_01583 | | putative L,D-transpeptidase YcbB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2888 | | Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 | 0.77 | EX28DRAFT_2011 | | Uncharacterized protein conserved in bacteria | 0.60 | 64 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS22975 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.76 | BWI76_RS09850 | | L,D-transpeptidase | low | > 92 |
| Serratia liquefaciens MT49 | 0.84 | IAI46_20360 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.54 | IAI46_08735 | | L,D-transpeptidase | low | > 86 |
| Rahnella sp. WP5 | 0.84 | EX31_RS13130 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.53 | EX31_RS18160 | | L,D-transpeptidase | 0.31 | 50 |
| Erwinia tracheiphila SCR3 | 0.83 | LU632_RS06230 | tcdA | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.54 | LU632_RS09885 | ldtD | L,D-transpeptidase | low | > 74 |
| Pantoea sp. MT58 | 0.83 | IAI47_04005 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.54 | IAI47_12780 | | L,D-transpeptidase | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS05030 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.49 | DDA3937_RS12930 | | L,D-transpeptidase | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.80 | HER17_RS16435 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.52 | HER17_RS12045 | | L,D-transpeptidase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS05035 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.49 | HGI48_RS13005 | | L,D-transpeptidase | low | > 71 |
| Dickeya dianthicola ME23 | 0.78 | DZA65_RS05375 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.49 | DZA65_RS13465 | | L,D-transpeptidase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.67 | CSW01_11750 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.21 | CSW01_06405 | | murein L,D-transpeptidase | low | > 62 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_266 | | UBA/THIF-type NAD/FAD binding protein | 0.19 | HP15_2647 | | peptidoglycan-binding domain 1 protein | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_1619 | | Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 | 0.17 | Psest_4007 | | Uncharacterized protein conserved in bacteria | low | > 67 |
| Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS06230 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.15 | PFLU_RS17345 | | L,D-transpeptidase family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS06230 | | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | 0.15 | PFLU_RS17345 | | L,D-transpeptidase family protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_06165 | | thiamine biosynthesis protein ThiF | 0.15 | PS417_15375 | | peptidoglycan-binding protein | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.50 | Pf1N1B4_3074 | | HesA/MoeB/ThiF family protein related to EC-YgdL | 0.18 | Pf1N1B4_42 | | hypothetical protein | low | > 87 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS14805 | | tRNA threonylcarbamoyladenosine dehydratase | 0.17 | LRK54_RS06230 | | L,D-transpeptidase family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS14520 | | tRNA threonylcarbamoyladenosine dehydratase | 0.17 | LRK55_RS05975 | | L,D-transpeptidase family protein | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_03630 | tcdA | tRNA A37 threonylcarbamoyladenosine dehydratase | 0.17 | OKGIIK_00395 | | Peptidoglycan-binding protein | low | > 52 |
Not shown: 41 genomes with orthologs for BNILDI_10480 only; 3 genomes with orthologs for BNILDI_20215 only