Conservation of cofitness between BBR_RS10265 and BBR_RS20185 in Bifidobacterium breve UCC2003

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS10265 DNA replication and repair protein RecF 1.0 BBR_RS20185 sugar ABC transporter permease 0.84 6
Shewanella oneidensis MR-1 0.14 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.08 SO1273 polyamine ABC transporter, permease protein (NCBI ptt file) low > 76
Rahnella sp. WP5 0.14 EX31_RS05975 DNA replication/repair protein RecF 0.18 EX31_RS17010 sugar ABC transporter permease low > 89
Shewanella sp. ANA-3 0.13 Shewana3_0011 recF recombination protein F (RefSeq) 0.08 Shewana3_3094 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 73
Serratia liquefaciens MT49 0.13 IAI46_00015 DNA replication/repair protein RecF 0.16 IAI46_00995 sn-glycerol-3-phosphate ABC transporter permease UgpA low > 86
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.14 CSW01_07790 glycerol-3-phosphate transporter permease low > 62
Shewanella loihica PV-4 0.13 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.08 Shew_0976 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 60
Shewanella amazonensis SB2B 0.13 Sama_0015 recF recombination protein F (RefSeq) 0.08 Sama_2639 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 62
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.18 EFB2_00370 sn-glycerol-3-phosphate transport system permease protein UgpA low > 86
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.18 JDDGAC_20405 ugpA sn-glycerol-3-phosphate ABC transporter permease UgpA low > 86
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.18 KEDOAH_11365 ugpA sn-glycerol-3-phosphate ABC transporter permease UgpA — —
Escherichia coli ECRC100 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.18 OKFHMN_16775 ugpA sn-glycerol-3-phosphate ABC transporter permease UgpA low > 80
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.18 NIAGMN_14545 ugpA sn-glycerol-3-phosphate ABC transporter permease UgpA — —
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.18 NOLOHH_08565 ugpA sn-glycerol-3-phosphate ABC transporter permease UgpA low > 75
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.18 ECOLIN_RS19740 sn-glycerol-3-phosphate ABC transporter permease UgpA low > 55
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.18 MCAODC_07305 ugpA sn-glycerol-3-phosphate ABC transporter permease UgpA low > 87
Enterobacter sp. TBS_079 0.11 MPMX20_00003 DNA replication and repair protein RecF 0.17 MPMX20_04328 sn-glycerol-3-phosphate transport system permease protein UgpA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.11 GFF1756 DNA recombination and repair protein RecF 0.18 GFF556 Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) low > 78
Enterobacter asburiae PDN3 0.11 EX28DRAFT_3987 DNA replication and repair protein RecF 0.17 EX28DRAFT_4284 ABC-type sugar transport systems, permease components low > 76
Rhizobium sp. OAE497 0.10 ABIE40_RS00200 DNA replication/repair protein RecF 0.21 ABIE40_RS25945 sugar ABC transporter permease low > 107
Sinorhizobium meliloti 1021 0.10 SMc02863 recombination protein F 0.23 SMc02472 ABC transporter permease low > 103
Bosea sp. OAE506 0.10 ABIE41_RS04170 DNA replication/repair protein RecF 0.21 ABIE41_RS06425 sugar ABC transporter permease low > 77
Marinobacter adhaerens HP15 0.10 HP15_3705 DNA replication and repair protein recF 0.17 HP15_2957 sugar ABC transporter, permease protein low > 73
Agrobacterium fabrum C58 0.10 Atu0073 recF-like protein 0.20 Atu3238 sugar ABC transporter permease low > 89
Azospirillum brasilense Sp245 0.08 AZOBR_RS17670 recombinase RecF 0.17 AZOBR_RS00070 glycerol-3-phosphate transporter permease low > 97

Not shown: 56 genomes with orthologs for BBR_RS10265 only; 11 genomes with orthologs for BBR_RS20185 only