| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_0839 | | NOL1/NOP2/sun family putative RNA methylase | 1.0 | B158DRAFT_0521 | | PEP-CTERM-box response regulator transcription factor | 0.67 | 2 |
| Pantoea sp. MT58 | 0.45 | IAI47_08680 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.30 | IAI47_04945 | | two-component system response regulator GlrR | low | > 76 |
| Dickeya dianthicola ME23 | 0.45 | DZA65_RS12530 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | DZA65_RS00425 | | sigma-54-dependent Fis family transcriptional regulator | low | > 75 |
| Dickeya dianthicola 67-19 | 0.45 | HGI48_RS12080 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | HGI48_RS00425 | | two-component system response regulator VfmH | low | > 71 |
| Dickeya dadantii 3937 | 0.45 | DDA3937_RS11990 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | DDA3937_RS20820 | | two-component system response regulator VfmH | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_07545 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.31 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | low | > 62 |
| Rahnella sp. WP5 | 0.44 | EX31_RS24855 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.31 | EX31_RS20615 | | two-component system response regulator GlrR | low | > 89 |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_02742 | | Ribosomal RNA small subunit methyltransferase F | 0.32 | MPMX20_03423 | | Transcriptional regulatory protein QseF | low | > 85 |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_0721 | | NOL1/NOP2/sun family putative RNA methylase | 0.31 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 76 |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_16950 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_01896 | | Ribosomal RNA small subunit methyltransferase F | 0.35 | OHPLBJKB_01490 | | Regulatory protein AtoC | low | > 73 |
| Escherichia coli BL21 | 0.43 | ECD_01806 | | 16S rRNA m(5)C1407 methyltransferase, SAM-dependent | 0.35 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_02166 | | Ribosomal RNA small subunit methyltransferase F | 0.35 | EFB2_01635 | | Regulatory protein AtoC | low | > 86 |
| Escherichia coli BW25113 | 0.43 | b1835 | yebU | putative nucleolar proteins (VIMSS) | 0.35 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.43 | BNILDI_15745 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | BNILDI_06055 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 75 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_1770 | yebU | rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) | 0.29 | Shewana3_2016 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 73 |
| Escherichia coli ECRC101 | 0.43 | MCAODC_18965 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 87 |
| Escherichia coli ECRC100 | 0.43 | OKFHMN_26440 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_01665 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_01620 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_04840 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.35 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | low | > 87 |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_01015 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 86 |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS10215 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.35 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | — | — |
| Shewanella oneidensis MR-1 | 0.43 | SO2609 | | NOL1/NOP2/sun family protein (NCBI ptt file) | 0.29 | SO3230 | flrC | flagellar regulatory protein C (NCBI ptt file) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2850 | | Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) | 0.32 | GFF2455 | | Putative sensory histidine kinase YfhA | 0.61 | 36 |
| Serratia liquefaciens MT49 | 0.42 | IAI46_10775 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.31 | IAI46_19460 | | two-component system response regulator GlrR | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS11715 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.30 | HER17_RS05925 | | two-component system response regulator GlrR | low | > 75 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS18000 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.32 | BWI76_RS21250 | | two-component system response regulator GlrR | low | > 92 |
| Shewanella loihica PV-4 | 0.41 | Shew_1583 | yebU | rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) | 0.31 | Shew_2341 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.40 | Sama_2039 | yebU | rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) | 0.31 | Sama_2213 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.17 | CA264_05610 | | rRNA methyltransferase | 0.31 | CA264_16520 | | DNA-binding response regulator | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.17 | ABZR88_RS00225 | | RNA methyltransferase | 0.30 | ABZR88_RS13070 | | sigma-54 dependent transcriptional regulator | low | > 71 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.16 | BT2042 | | tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) | 0.33 | BT0856 | | two-component system response regulator (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.16 | HMPREF1181_RS08100 | | rRNA cytosine-C5-methyltransferase | 0.28 | HMPREF1181_RS03655 | | sigma-54-dependent Fis family transcriptional regulator | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.15 | BACOVA_00671 | | NOL1/NOP2/sun family protein | 0.33 | BACOVA_02581 | | Sigma-54 interaction domain protein | low | > 94 |
| Parabacteroides merdae CL09T00C40 | 0.14 | HMPREF1078_RS16740 | | rRNA cytosine-C5-methyltransferase | 0.32 | HMPREF1078_RS12140 | | sigma-54 dependent transcriptional regulator | low | > 61 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.14 | Echvi_1153 | | tRNA and rRNA cytosine-C5-methylases | 0.33 | Echvi_2422 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 79 |
Not shown: 0 genomes with orthologs for B158DRAFT_0839 only; 37 genomes with orthologs for B158DRAFT_0521 only