Conservation of cofitness between Shewana3_3499 and Shewana3_3472 in Shewanella sp. ANA-3

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_3499 glycine dehydrogenase (RefSeq) 1.0 Shewana3_3472 TonB-dependent siderophore receptor (RefSeq) 0.44 16
Shewanella oneidensis MR-1 0.99 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) 0.94 SO0815 TonB-dependent receptor C-terminal domain protein (NCBI ptt file) 0.68 41
Shewanella amazonensis SB2B 0.85 Sama_2719 glycine dehydrogenase (RefSeq) 0.55 Sama_2631 TonB-dependent receptor domain-containing protein (RefSeq) 0.73 62
Shewanella loihica PV-4 0.84 Shew_3062 glycine dehydrogenase (RefSeq) 0.67 Shew_2990 TonB-dependent receptor (RefSeq) low > 60
Escherichia coli ECRC102 0.67 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 NIAGMN_25655 yncD putative TonB-dependent receptor YncD
Escherichia fergusonii Becca 0.67 EFB2_00999 Glycine dehydrogenase (decarboxylating) 0.09 EFB2_02535 Metal-pseudopaline receptor CntO low > 86
Escherichia coli ECRC100 0.67 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 OKFHMN_01520 yncD putative TonB-dependent receptor YncD low > 80
Escherichia coli ECRC98 0.67 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 JDDGAC_04010 yncD putative TonB-dependent receptor YncD low > 86
Escherichia coli ECRC99 0.67 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 KEDOAH_26920 yncD putative TonB-dependent receptor YncD
Escherichia coli ECRC101 0.67 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 MCAODC_16420 yncD putative TonB-dependent receptor YncD low > 87
Escherichia coli ECOR38 0.67 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.09 HEPCGN_26290 yncD putative TonB-dependent receptor YncD low > 87
Escherichia coli BW25113 0.67 b2903 gcvP glycine dehydrogenase (NCBI) 0.08 b1451 yncD predicted iron outer membrane transporter (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 0.08 ECD_01408 putative iron outer membrane transporter low > 61
Escherichia coli ECRC62 0.67 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 BNILDI_17625 yncD putative TonB-dependent receptor YncD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.08 OHPLBJKB_02262 Vitamin B12 transporter BtuB low > 73
Escherichia coli ECOR27 0.67 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 0.08 NOLOHH_19190 yncD putative TonB-dependent receptor YncD low > 75
Klebsiella michiganensis M5al 0.67 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.06 BWI76_RS13500 TonB-dependent receptor low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.07 GFF2578 Probable tonB-dependent receptor yncD precursor 0.48 59
Serratia liquefaciens MT49 0.66 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.08 IAI46_15720 TonB-dependent receptor low > 86
Enterobacter sp. TBS_079 0.66 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.09 MPMX20_02408 Fe(3+) dicitrate transport protein FecA low > 85
Rahnella sp. WP5 0.66 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.08 EX31_RS00270 TonB-dependent receptor low > 89
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.09 EX28DRAFT_1043 TonB-dependent siderophore receptor low > 76
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) 0.26 B158DRAFT_2467 Outer membrane cobalamin receptor protein
Dechlorosoma suillum PS 0.63 Dsui_2737 glycine dehydrogenase, decarboxylating 0.16 Dsui_0529 outer membrane cobalamin receptor protein low > 51
Paraburkholderia graminis OAS925 0.57 ABIE53_000238 glycine dehydrogenase 0.07 ABIE53_005476 iron complex outermembrane receptor protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_02409 glycine dehydrogenase 0.06 H281DRAFT_01336 Outer membrane receptor proteins, mostly Fe transport low > 103
Pseudomonas fluorescens SBW25 0.54 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.06 PFLU_RS14315 TonB-dependent receptor low > 109
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.06 PFLU_RS14315 TonB-dependent receptor low > 109
Rhodopseudomonas palustris CGA009 0.53 TX73_019935 aminomethyl-transferring glycine dehydrogenase 0.13 TX73_024965 TonB-dependent receptor low > 86
Variovorax sp. OAS795 0.52 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase 0.06 ABID97_RS02060 TonB-dependent siderophore receptor low > 91

Not shown: 56 genomes with orthologs for Shewana3_3499 only; 1 genomes with orthologs for Shewana3_3472 only