Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Shewanella sp. ANA-3 | 1.0 | Shewana3_3499 | | glycine dehydrogenase (RefSeq) | 1.0 | Shewana3_3472 | | TonB-dependent siderophore receptor (RefSeq) | 0.44 | 16 |
Shewanella oneidensis MR-1 | 0.99 | SO0781 | gcvP | glycine cleavage system P protein (NCBI ptt file) | 0.94 | SO0815 | | TonB-dependent receptor C-terminal domain protein (NCBI ptt file) | 0.68 | 41 |
Shewanella amazonensis SB2B | 0.85 | Sama_2719 | | glycine dehydrogenase (RefSeq) | 0.55 | Sama_2631 | | TonB-dependent receptor domain-containing protein (RefSeq) | 0.73 | 62 |
Shewanella loihica PV-4 | 0.84 | Shew_3062 | | glycine dehydrogenase (RefSeq) | 0.67 | Shew_2990 | | TonB-dependent receptor (RefSeq) | low | > 60 |
Escherichia coli ECRC102 | 0.67 | NIAGMN_17295 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | NIAGMN_25655 | yncD | putative TonB-dependent receptor YncD | — | — |
Escherichia fergusonii Becca | 0.67 | EFB2_00999 | | Glycine dehydrogenase (decarboxylating) | 0.09 | EFB2_02535 | | Metal-pseudopaline receptor CntO | low | > 86 |
Escherichia coli ECRC100 | 0.67 | OKFHMN_19530 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | OKFHMN_01520 | yncD | putative TonB-dependent receptor YncD | low | > 80 |
Escherichia coli ECRC98 | 0.67 | JDDGAC_23170 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | JDDGAC_04010 | yncD | putative TonB-dependent receptor YncD | low | > 86 |
Escherichia coli ECRC99 | 0.67 | KEDOAH_08610 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | KEDOAH_26920 | yncD | putative TonB-dependent receptor YncD | — | — |
Escherichia coli ECRC101 | 0.67 | MCAODC_10050 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | MCAODC_16420 | yncD | putative TonB-dependent receptor YncD | low | > 87 |
Escherichia coli ECOR38 | 0.67 | HEPCGN_18820 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.09 | HEPCGN_26290 | yncD | putative TonB-dependent receptor YncD | low | > 87 |
Escherichia coli BW25113 | 0.67 | b2903 | gcvP | glycine dehydrogenase (NCBI) | 0.08 | b1451 | yncD | predicted iron outer membrane transporter (NCBI) | low | > 76 |
Escherichia coli BL21 | 0.67 | ECD_02735 | | glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex | 0.08 | ECD_01408 | | putative iron outer membrane transporter | low | > 61 |
Escherichia coli ECRC62 | 0.67 | BNILDI_09980 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | BNILDI_17625 | yncD | putative TonB-dependent receptor YncD | low | > 75 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_00812 | | Glycine dehydrogenase (decarboxylating) | 0.08 | OHPLBJKB_02262 | | Vitamin B12 transporter BtuB | low | > 73 |
Escherichia coli ECOR27 | 0.67 | NOLOHH_11445 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.08 | NOLOHH_19190 | yncD | putative TonB-dependent receptor YncD | low | > 75 |
Klebsiella michiganensis M5al | 0.67 | BWI76_RS23870 | | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | 0.06 | BWI76_RS13500 | | TonB-dependent receptor | low | > 92 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.67 | GFF3003 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.07 | GFF2578 | | Probable tonB-dependent receptor yncD precursor | 0.48 | 59 |
Serratia liquefaciens MT49 | 0.66 | IAI46_20850 | | aminomethyl-transferring glycine dehydrogenase | 0.08 | IAI46_15720 | | TonB-dependent receptor | low | > 86 |
Enterobacter sp. TBS_079 | 0.66 | MPMX20_03762 | | Glycine dehydrogenase (decarboxylating) | 0.09 | MPMX20_02408 | | Fe(3+) dicitrate transport protein FecA | low | > 85 |
Rahnella sp. WP5 | 0.66 | EX31_RS21520 | | aminomethyl-transferring glycine dehydrogenase | 0.08 | EX31_RS00270 | | TonB-dependent receptor | low | > 89 |
Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_2955 | | glycine dehydrogenase (decarboxylating) | 0.09 | EX28DRAFT_1043 | | TonB-dependent siderophore receptor | low | > 76 |
Kangiella aquimarina DSM 16071 | 0.64 | B158DRAFT_0545 | | glycine dehydrogenase (decarboxylating) | 0.26 | B158DRAFT_2467 | | Outer membrane cobalamin receptor protein | — | — |
Dechlorosoma suillum PS | 0.63 | Dsui_2737 | | glycine dehydrogenase, decarboxylating | 0.16 | Dsui_0529 | | outer membrane cobalamin receptor protein | low | > 51 |
Paraburkholderia graminis OAS925 | 0.57 | ABIE53_000238 | | glycine dehydrogenase | 0.07 | ABIE53_005476 | | iron complex outermembrane receptor protein | low | > 113 |
Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_02409 | | glycine dehydrogenase | 0.06 | H281DRAFT_01336 | | Outer membrane receptor proteins, mostly Fe transport | low | > 103 |
Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS24000 | | aminomethyl-transferring glycine dehydrogenase | 0.06 | PFLU_RS14315 | | TonB-dependent receptor | low | > 109 |
Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS24000 | | aminomethyl-transferring glycine dehydrogenase | 0.06 | PFLU_RS14315 | | TonB-dependent receptor | low | > 109 |
Rhodopseudomonas palustris CGA009 | 0.53 | TX73_019935 | | aminomethyl-transferring glycine dehydrogenase | 0.13 | TX73_024965 | | TonB-dependent receptor | low | > 86 |
Variovorax sp. OAS795 | 0.52 | ABID97_RS19655 | | aminomethyl-transferring glycine dehydrogenase | 0.06 | ABID97_RS02060 | | TonB-dependent siderophore receptor | low | > 91 |