Conservation of cofitness between Shew_2497 and Shew_2493 in Shewanella loihica PV-4

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2497 sigma-54 dependent trancsriptional regulator (RefSeq) 1.0 Shew_2493 protein of unknown function DUF463, YcjX family protein (RefSeq) 0.59 13
Shewanella sp. ANA-3 0.79 Shewana3_2649 Fis family transcriptional regulator (RefSeq) 0.62 Shewana3_2645 protein of unknown function DUF463, YcjX family protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.79 SO1806 pspF psp operon transcriptional activator (NCBI ptt file) 0.61 SO1810 hypothetical ATPase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.76 Sama_1236 psp operon transcriptional activator (RefSeq) 0.55 Sama_1240 ATPase (RefSeq) low > 62
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13505_RS06760 phage shock protein operon transcriptional activator 0.39 PagCFBP13505_RS06735 YcjX family protein low > 74
Serratia liquefaciens MT49 0.58 IAI46_13505 phage shock protein operon transcriptional activator 0.42 IAI46_13480 YcjX family protein low > 87
Escherichia coli BW25113 0.57 b1303 pspF psp operon transcriptional activator (VIMSS) 0.40 b1321 ycjX conserved protein with nucleoside triphosphate hydrolase domain (NCBI) low > 76
Escherichia coli BL21 0.57 ECD_01280 psp operon transcriptional activator 0.40 ECD_01298 DUF463 family protein, putative P-loop NTPase — —
Escherichia fergusonii Becca 0.57 EFB2_02624 Psp operon transcriptional activator 0.40 EFB2_02606 putative protein YcjX low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02379 Psp operon transcriptional activator 0.40 OHPLBJKB_02361 putative protein YcjX low > 74
Escherichia coli ECRC98 0.57 JDDGAC_04960 pspF phage shock protein operon transcriptional activator 0.41 JDDGAC_04860 ycjX Uncharacterized protein YcjX low > 87
Escherichia coli ECRC99 0.57 KEDOAH_26360 pspF phage shock protein operon transcriptional activator 0.41 KEDOAH_26460 ycjX Uncharacterized protein YcjX — —
Escherichia coli ECRC101 0.57 MCAODC_15855 pspF phage shock protein operon transcriptional activator 0.41 MCAODC_15955 ycjX Uncharacterized protein YcjX low > 87
Escherichia coli ECOR38 0.57 HEPCGN_25785 pspF phage shock protein operon transcriptional activator 0.41 HEPCGN_25875 ycjX Uncharacterized protein YcjX low > 88
Escherichia coli ECRC102 0.57 NIAGMN_26585 pspF phage shock protein operon transcriptional activator 0.41 NIAGMN_26485 ycjX Uncharacterized protein YcjX — —
Escherichia coli ECOR27 0.57 NOLOHH_20100 pspF phage shock protein operon transcriptional activator 0.40 NOLOHH_20010 ycjX Uncharacterized protein YcjX low > 76
Escherichia coli Nissle 1917 0.57 ECOLIN_RS07845 phage shock protein operon transcriptional activator 0.41 ECOLIN_RS07935 YcjX family protein — —
Escherichia coli ECRC62 0.57 BNILDI_18250 pspF phage shock protein operon transcriptional activator 0.40 BNILDI_18160 ycjX Uncharacterized protein YcjX 0.62 33
Escherichia coli ECRC100 0.57 OKFHMN_02415 pspF phage shock protein operon transcriptional activator 0.41 OKFHMN_02315 ycjX Uncharacterized protein YcjX low > 79
Klebsiella michiganensis M5al 0.56 BWI76_RS12445 phage shock protein operon transcriptional activator 0.42 BWI76_RS12475 hypothetical protein low > 92
Klebsiella pneumoniae MKP103 0.56 KDGMDA_19915 phage shock protein operon transcriptional activator 0.42 KDGMDA_19940 Uncharacterized protein YcjX low > 95
Enterobacter sp. TBS_079 0.56 MPMX20_02473 Psp operon transcriptional activator 0.41 MPMX20_02456 putative protein YcjX low > 85
Dickeya dianthicola ME23 0.56 DZA65_RS12950 phage shock protein operon transcriptional activator 0.43 DZA65_RS12930 YcjX family protein low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS12500 phage shock protein operon transcriptional activator 0.43 HGI48_RS12480 YcjX family protein low > 71
Pantoea sp. MT58 0.56 IAI47_09390 phage shock protein operon transcriptional activator 0.39 IAI47_09415 YcjX family protein 0.82 1
Enterobacter asburiae PDN3 0.56 EX28DRAFT_0975 psp operon transcriptional activator PspF 0.42 EX28DRAFT_0992 Predicted ATPase low > 76
Dickeya dadantii 3937 0.56 DDA3937_RS12430 phage shock protein operon transcriptional activator 0.43 DDA3937_RS12410 YcjX family protein low > 74
Pectobacterium carotovorum WPP14 0.56 HER17_RS09515 phage shock protein operon transcriptional activator 0.41 HER17_RS09560 YcjX family protein low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF2687 Psp operon transcriptional activator 0.40 GFF2681 Conserved protein YcjX with nucleoside triphosphate hydrolase domain low > 78
Erwinia amylovora T8 0.55 OLJFJH_13670 phage shock protein operon transcriptional activator 0.41 OLJFJH_13695 DUF463 domain-containing protein low > 58
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_08440 phage shock protein operon transcriptional activator 0.40 CSW01_06595 nucleoside triphosphate hydrolase low > 62
Rahnella sp. WP5 0.55 EX31_RS15690 phage shock protein operon transcriptional activator 0.42 EX31_RS15665 YcjX family protein low > 89
Erwinia tracheiphila HP pepo 2.2 0.55 IJEDHG_23015 pspF phage shock protein operon transcriptional activator 0.40 IJEDHG_23040 DUF463 domain-containing protein low > 61
Erwinia tracheiphila SCR3 0.55 LU632_RS11565 pspF phage shock protein operon transcriptional activator 0.40 LU632_RS11540 YcjX family protein low > 73
Azospirillum sp. SherDot2 0.55 MPMX19_02138 Psp operon transcriptional activator 0.30 MPMX19_03158 putative protein YcjX low > 112
Azospirillum brasilense Sp245 0.54 AZOBR_RS02540 ATPase AAA 0.30 AZOBR_RS22080 hypothetical protein low > 97

Not shown: 6 genomes with orthologs for Shew_2497 only; 8 genomes with orthologs for Shew_2493 only