Conservation of cofitness between SO2094 and SO2093 in Shewanella oneidensis MR-1

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO2094 hypF hydrogenase maturation protein HypF (NCBI ptt file) 1.0 SO2093 hypB hydrogenase accessory protein HypB (NCBI ptt file) 0.38 12
Shewanella sp. ANA-3 0.84 Shewana3_1875 (NiFe) hydrogenase maturation protein HypF (RefSeq) 0.84 Shewana3_1871 hydrogenase accessory protein HypB (RefSeq) low > 73
Shewanella loihica PV-4 0.50 Shew_1760 (NiFe) hydrogenase maturation protein HypF (RefSeq) 0.70 Shew_1759 hydrogenase accessory protein HypB (RefSeq) low > 60
Shewanella amazonensis SB2B 0.45 Sama_1674 hydrogenase maturation protein HypF (RefSeq) 0.69 Sama_1673 hydrogenase accessory protein HypB (RefSeq) low > 62
Synechocystis sp000284455 PCC 6803 0.30 SGL_RS13225 carbamoyltransferase HypF 0.35 SGL_RS05580 hydrogenase nickel incorporation protein HypB low > 52
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2551 hypF (NiFe) hydrogenase maturation protein HypF 0.37 Synpcc7942_2552 hypB hydrogenase accessory protein HypB low > 38
Rahnella sp. WP5 0.26 EX31_RS19955 carbamoyltransferase HypF 0.34 EX31_RS19890 hydrogenase nickel incorporation protein HypB low > 89
Enterobacter asburiae PDN3 0.25 EX28DRAFT_2803 [NiFe] hydrogenase maturation protein HypF 0.33 EX28DRAFT_2818 hydrogenase accessory protein HypB low > 76
Enterobacter sp. TBS_079 0.25 MPMX20_03597 Carbamoyltransferase HypF 0.36 MPMX20_03612 Hydrogenase maturation factor HypB low > 85
Alteromonas macleodii MIT1002 0.24 MIT1002_00281 Carbamoyltransferase HypF 0.37 MIT1002_00279 Hydrogenase isoenzymes nickel incorporation protein HypB low > 70
Serratia liquefaciens MT49 0.24 IAI46_12485 carbamoyltransferase HypF 0.36 IAI46_12550 hydrogenase nickel incorporation protein HypB low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4706 [NiFe] hydrogenase metallocenter assembly protein HypF 0.36 GFF4721 [NiFe] hydrogenase nickel incorporation-associated protein HypB low > 78
Escherichia coli ECRC101 0.23 MCAODC_11160 hypF carbamoyltransferase HypF 0.35 MCAODC_11085 hypB hydrogenase nickel incorporation protein HypB low > 87
Escherichia coli ECRC100 0.23 OKFHMN_20635 hypF carbamoyltransferase HypF 0.35 OKFHMN_20560 hypB hydrogenase nickel incorporation protein HypB low > 79
Escherichia coli ECRC102 0.23 NIAGMN_18405 hypF carbamoyltransferase HypF 0.35 NIAGMN_18330 hypB hydrogenase nickel incorporation protein HypB low > 80
Escherichia coli ECRC99 0.23 KEDOAH_07500 hypF carbamoyltransferase HypF 0.35 KEDOAH_07575 hypB hydrogenase nickel incorporation protein HypB — —
Escherichia coli ECRC98 0.23 JDDGAC_24300 hypF carbamoyltransferase HypF 0.35 JDDGAC_24225 hypB hydrogenase nickel incorporation protein HypB low > 87
Escherichia coli ECRC62 0.23 BNILDI_11040 hypF carbamoyltransferase HypF 0.35 BNILDI_10955 hypB hydrogenase nickel incorporation protein HypB low > 75
Escherichia coli BL21 0.23 ECD_02562 carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein 0.35 ECD_02577 GTP hydrolase low > 61
Klebsiella pneumoniae MKP103 0.23 KDGMDA_02940 carbamoyltransferase HypF 0.31 KDGMDA_03020 hydrogenase nickel incorporation protein HypB low > 95
Escherichia coli ECOR27 0.23 NOLOHH_12480 hypF carbamoyltransferase HypF 0.35 NOLOHH_12405 hypB hydrogenase nickel incorporation protein HypB low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_01022 Carbamoyltransferase HypF 0.35 OHPLBJKB_01007 Hydrogenase maturation factor HypB low > 74
Escherichia coli BW25113 0.23 b2712 hypF carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases (NCBI) 0.35 b2727 hypB GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) 0.44 12
Escherichia coli ECOR38 0.23 HEPCGN_19835 hypF carbamoyltransferase HypF 0.35 HEPCGN_19750 hypB hydrogenase nickel incorporation protein HypB low > 88
Escherichia coli Nissle 1917 0.23 ECOLIN_RS15155 carbamoyltransferase HypF 0.35 ECOLIN_RS15240 hydrogenase nickel incorporation protein HypB low > 55
Escherichia fergusonii Becca 0.23 EFB2_01212 Carbamoyltransferase HypF 0.36 EFB2_01196 Hydrogenase maturation factor HypB low > 86
Methanococcus maripaludis S2 0.22 MMP_RS00805 carbamoyltransferase HypF 0.27 MMP_RS07810 hydrogenase nickel incorporation protein HypB — —
Methanococcus maripaludis JJ 0.22 MMJJ_RS04685 carbamoyltransferase HypF 0.27 MMJJ_RS06545 hydrogenase nickel incorporation protein HypB — —
Rhodospirillum rubrum S1H 0.22 Rru_A0308 Hydrogenase maturation protein HypF (NCBI) 0.41 Rru_A0302 Hydrogenase accessory protein HypB (NCBI) low > 58

Not shown: 12 genomes with orthologs for SO2094 only; 3 genomes with orthologs for SO2093 only