Conservation of cofitness between b3128 and b4097 in Escherichia coli BW25113

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3128 garD (D)-galactarate dehydrogenase (NCBI) 1.0 b4097 phnK carbon-phosphorus lyase complex subunit (NCBI) 0.15 7
Escherichia coli BL21 1.00 ECD_02993 D-galactarate dehydrogenase 1.00 ECD_03969 carbon-phosphorus lyase complex subunit, putative ATP transporter ATP-binding protein low > 60
Escherichia coli ECRC99 1.00 KEDOAH_09795 garD galactarate dehydratase 1.00 KEDOAH_15495 phnK phosphonate C-P lyase system protein PhnK — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00575 Galactarate dehydratase (L-threo-forming) 1.00 OHPLBJKB_03947 Putative phosphonates utilization ATP-binding protein PhnK low > 73
Escherichia coli ECRC101 1.00 MCAODC_08865 garD galactarate dehydratase 1.00 MCAODC_03180 phnK phosphonate C-P lyase system protein PhnK — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS17975 galactarate dehydratase 0.99 ECOLIN_RS23725 phosphonate C-P lyase system protein PhnK — —
Escherichia coli ECRC101 1.00 OKFHMN_18355 garD galactarate dehydratase 1.00 OKFHMN_12670 phnK phosphonate C-P lyase system protein PhnK — —
Escherichia coli ECRC98 1.00 JDDGAC_21985 garD galactarate dehydratase 0.99 JDDGAC_16305 phnK phosphonate C-P lyase system protein PhnK — —
Escherichia coli ECRC102 1.00 NIAGMN_16115 garD galactarate dehydratase 1.00 NIAGMN_10515 phnK phosphonate C-P lyase system protein PhnK — —
Escherichia coli ECOR38 1.00 HEPCGN_17190 garD galactarate dehydratase 0.99 HEPCGN_11300 phnK phosphonate C-P lyase system protein PhnK low > 85
Escherichia coli ECRC62 1.00 BNILDI_01395 garD galactarate dehydratase 1.00 BNILDI_06565 phnK phosphonate C-P lyase system protein PhnK — —
Escherichia coli ECOR27 1.00 NOLOHH_10135 garD galactarate dehydratase 1.00 NOLOHH_04930 phnK phosphonate C-P lyase system protein PhnK low > 57
Escherichia fergusonii Becca 0.99 EFB2_00691 Galactarate dehydratase (L-threo-forming) 0.99 EFB2_04485 Putative phosphonates utilization ATP-binding protein PhnK low > 86
Enterobacter asburiae PDN3 0.94 EX28DRAFT_3184 galactarate dehydratase 0.94 EX28DRAFT_4208 phosphonate C-P lyase system protein PhnK low > 76
Klebsiella michiganensis M5al 0.94 BWI76_RS24840 galactarate dehydratase 0.94 BWI76_RS02205 phosphonate C-P lyase system protein PhnK low > 92
Enterobacter sp. TBS_079 0.94 MPMX20_04037 Galactarate dehydratase (L-threo-forming) 0.94 MPMX20_00317 Putative phosphonates utilization ATP-binding protein PhnK low > 85
Rahnella sp. WP5 0.85 EX31_RS07995 galactarate dehydratase 0.86 EX31_RS08430 phosphonate C-P lyase system protein PhnK low > 89
Dickeya dadantii 3937 0.84 DDA3937_RS17065 galactarate dehydratase 0.84 DDA3937_RS07620 phosphonate C-P lyase system protein PhnK low > 74
Dickeya dianthicola 67-19 0.84 HGI48_RS17115 galactarate dehydratase 0.85 HGI48_RS07470 phosphonate C-P lyase system protein PhnK low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS18190 galactarate dehydratase 0.85 DZA65_RS07975 phosphonate C-P lyase system protein PhnK low > 75
Pantoea sp. MT58 0.82 IAI47_04075 galactarate dehydratase 0.87 IAI47_07775 phosphonate C-P lyase system protein PhnK low > 76
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS29090 galactarate dehydrogenase 0.61 RR42_RS28105 phosphonate C-P lyase system protein PhnK — —
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS24160 D-galactarate dehydratase 0.61 BPHYT_RS29480 phosphonate C-P lyase — —
Variovorax sp. SCN45 0.65 GFF2921 D-galactarate dehydratase (EC 4.2.1.42) 0.64 GFF6257 Phosphonates utilization ATP-binding protein PhnK — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS33575 galactarate dehydratase 0.60 QEN71_RS14220 phosphonate C-P lyase system protein PhnK low > 153
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS04250 galactarate dehydratase 0.70 PFLU_RS08780 phosphonate C-P lyase system protein PhnK low > 109
Pseudomonas fluorescens SBW25 0.63 PFLU_RS04250 galactarate dehydratase 0.70 PFLU_RS08780 phosphonate C-P lyase system protein PhnK low > 109
Acidovorax sp. GW101-3H11 0.60 Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42) 0.67 Ac3H11_4546 Phosphonates transport ATP-binding protein PhnK low > 79
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4225 galactarate dehydratase 0.70 Psyr_2255 ABC transporter low > 86
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4225 galactarate dehydratase 0.70 Psyr_2255 ABC transporter low > 86
Pseudomonas stutzeri RCH2 0.60 Psest_0377 galactarate dehydratase 0.71 Psest_0092 phosphonate C-P lyase system protein PhnK — —
Bosea sp. OAE506 0.31 ABIE41_RS14910 altronate dehydratase family protein 0.60 ABIE41_RS07670 phosphonate C-P lyase system protein PhnK low > 77
Agrobacterium fabrum C58 0.29 Atu3817 dehydratase 0.68 Atu0177 ABC transporter, nucleotide binding/ATPase protein (phosphonate) low > 89
Sinorhizobium meliloti 1021 0.27 SMc02776 D-arabinoate dehydratase (EC 4.2.1.5); also involved in L-fucose catabolism (from data) 0.67 SM_b20763 phosphonate C-P lyase system protein PhnK low > 103
Rhizobium sp. OAE497 0.26 ABIE40_RS02235 altronate dehydratase family protein 0.69 ABIE40_RS00550 phosphonate C-P lyase system protein PhnK low > 107

Not shown: 25 genomes with orthologs for b3128 only; 4 genomes with orthologs for b4097 only