Conservation of cofitness between b3753 and b3929 in Escherichia coli BW25113

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) 1.0 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.61 8
Escherichia fergusonii Becca 1.00 EFB2_04880 Ribose operon repressor 1.00 EFB2_04689 Regulator of ribonuclease activity A low > 86
Escherichia coli ECRC98 1.00 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR 1.00 JDDGAC_17375 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECRC102 1.00 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR 1.00 NIAGMN_11505 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECRC99 1.00 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR 1.00 KEDOAH_14410 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECRC101 1.00 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR 1.00 MCAODC_04250 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECOR27 1.00 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR 1.00 NOLOHH_05895 rraA ribonuclease E activity regulator RraA low > 57
Escherichia coli ECRC101 1.00 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR 1.00 OKFHMN_13750 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECOR38 1.00 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR 1.00 HEPCGN_12395 rraA ribonuclease E activity regulator RraA low > 85
Escherichia coli ECRC62 1.00 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR 1.00 BNILDI_05635 rraA ribonuclease E activity regulator RraA — —
Escherichia coli BL21 0.99 ECD_03639 transcriptional repressor of ribose metabolism 1.00 ECD_03814 ribonuclease E (RNase E) inhibitor protein low > 60
Escherichia coli Nissle 1917 0.96 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR 1.00 ECOLIN_RS22625 ribonuclease E activity regulator RraA low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF1704 Ribose operon repressor 0.98 GFF2311 Ribonuclease E inhibitor RraA low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_4029 transcriptional regulator, LacI family 0.96 EX28DRAFT_4402 regulator of ribonuclease activity A low > 76
Enterobacter sp. TBS_079 0.88 MPMX20_04614 Ribose operon repressor 0.97 MPMX20_04540 Regulator of ribonuclease activity A low > 85
Klebsiella michiganensis M5al 0.85 BWI76_RS00295 transcriptional regulator RbsR 0.96 BWI76_RS00740 ribonuclease E activity regulator RraA low > 92
Pantoea sp. MT58 0.74 IAI47_00375 ribose operon transcriptional repressor RbsR 0.81 IAI47_00840 ribonuclease E activity regulator RraA low > 76
Rahnella sp. WP5 0.73 EX31_RS06195 ribose operon transcriptional repressor RbsR 0.93 EX31_RS14255 ribonuclease E activity regulator RraA low > 89
Serratia liquefaciens MT49 0.73 IAI46_25050 ribose operon transcriptional repressor RbsR 0.94 IAI46_24585 ribonuclease E activity regulator RraA low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS00055 ribose operon transcriptional repressor RbsR 0.86 DDA3937_RS00905 ribonuclease E activity regulator RraA low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS21525 ribose operon transcriptional repressor RbsR 0.92 HER17_RS00840 ribonuclease E activity regulator RraA low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS21310 ribose operon transcriptional repressor RbsR 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA low > 71
Dickeya dianthicola ME23 0.66 DZA65_RS22290 substrate-binding domain-containing protein 0.86 DZA65_RS21515 ribonuclease E activity regulator RraA low > 75
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_14670 transcriptional repressor PurR 0.73 CSW01_13500 ribonuclease E activity regulator RraA low > 62
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS11495 LacI family transcription regulator 0.41 HSERO_RS10555 ribonuclease low > 78
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_6032 Ribose operon repressor 0.57 Pf1N1B4_3828 Ribonuclease E inhibitor RraA low > 87
Acidovorax sp. GW101-3H11 0.37 Ac3H11_1840 Ribose operon repressor 0.42 Ac3H11_2834 Ribonuclease E inhibitor RraA low > 79
Variovorax sp. SCN45 0.37 GFF2137 Ribose operon repressor 0.38 GFF4367 KEGG: regulator of ribonuclease activity A — —
Pseudomonas sp. RS175 0.37 PFR28_02734 Ribose operon repressor 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 88
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_3909 Ribose operon repressor 0.56 PfGW456L13_4110 Ribonuclease E inhibitor RraA low > 87
Azospirillum sp. SherDot2 0.32 MPMX19_02768 Ribose operon repressor 0.39 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 112
Shewanella oneidensis MR-1 0.23 SO3516 transcriptional regulator, LacI family (NCBI ptt file) 0.74 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.22 Shew_1870 LacI family transcription regulator (RefSeq) 0.72 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) — —
Shewanella sp. ANA-3 0.22 Shewana3_3122 LacI family transcription regulator (RefSeq) 0.73 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) low > 73

Not shown: 11 genomes with orthologs for b3753 only; 30 genomes with orthologs for b3929 only