Conservation of cofitness between b3591 and b3895 in Escherichia coli BW25113

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3591 selA selenocysteine synthase (NCBI) 1.0 b3895 fdhD formate dehydrogenase accessory protein (NCBI) 0.86 2
Escherichia coli ECRC101 1.00 MCAODC_06360 selA L-seryl-tRNA(Sec) selenium transferase 0.99 MCAODC_04450 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia coli ECRC101 1.00 OKFHMN_15845 selA L-seryl-tRNA(Sec) selenium transferase 0.99 OKFHMN_13950 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia coli ECOR27 1.00 NOLOHH_07740 selA L-seryl-tRNA(Sec) selenium transferase 0.99 NOLOHH_06070 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.65 35
Escherichia coli ECRC98 1.00 JDDGAC_19475 selA L-seryl-tRNA(Sec) selenium transferase 0.99 JDDGAC_17575 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia coli ECRC62 1.00 BNILDI_03790 selA L-seryl-tRNA(Sec) selenium transferase 0.99 BNILDI_05455 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia coli ECRC99 1.00 KEDOAH_12305 selA L-seryl-tRNA(Sec) selenium transferase 0.99 KEDOAH_14205 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00112 L-seryl-tRNA(Sec) selenium transferase 1.00 OHPLBJKB_04155 Sulfur carrier protein FdhD low > 73
Escherichia coli BL21 1.00 ECD_03446 selenocysteine synthase 0.99 ECD_03780 formate dehydrogenase formation protein 0.54 2
Escherichia coli ECRC102 1.00 NIAGMN_13605 selA L-seryl-tRNA(Sec) selenium transferase 0.99 NIAGMN_11705 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia fergusonii Becca 0.99 EFB2_00218 L-seryl-tRNA(Sec) selenium transferase 0.99 EFB2_04720 Sulfur carrier protein FdhD low > 86
Escherichia coli ECOR38 0.99 HEPCGN_14680 selA L-seryl-tRNA(Sec) selenium transferase 0.99 HEPCGN_12585 fdhD formate dehydrogenase accessory sulfurtransferase FdhD low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20515 L-seryl-tRNA(Sec) selenium transferase 0.99 ECOLIN_RS22460 formate dehydrogenase accessory sulfurtransferase FdhD low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF420 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.77 GFF2254 Formate dehydrogenase chain D (EC 1.2.1.2) low > 78
Klebsiella michiganensis M5al 0.81 BWI76_RS27140 L-selenocysteinyl-tRNA(Sec) synthase 0.83 BWI76_RS00475 sulfurtransferase FdhD low > 92
Enterobacter asburiae PDN3 0.73 EX28DRAFT_3845 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.79 EX28DRAFT_4379 formate dehydrogenase family accessory protein FdhD low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_00140 L-seryl-tRNA(Sec) selenium transferase 0.78 MPMX20_04574 Sulfur carrier protein FdhD 0.27 27
Serratia liquefaciens MT49 0.66 IAI46_00240 L-seryl-tRNA(Sec) selenium transferase 0.71 IAI46_00205 formate dehydrogenase accessory sulfurtransferase FdhD 0.38 48
Shewanella sp. ANA-3 0.50 Shewana3_0106 selenocysteine synthase (RefSeq) 0.43 Shewana3_0108 formate dehydrogenase accessory protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO0105 selA L-seryl-tRNA selenium transferase (NCBI ptt file) 0.43 SO0107 fdhD formate dehydrogenase accessory protein FdhD (NCBI ptt file) low > 76
Variovorax sp. SCN45 0.49 GFF5654 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.34 GFF5642 Sulfur carrier protein FdhD — —
Sinorhizobium meliloti 1021 0.49 SMa0011 selenocysteine synthase 0.33 SMc03085 formate dehydrogenase accessory protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_24985 L-seryl-tRNA(Sec) selenium transferase 0.32 AO353_11830 formate dehydrogenase family accessory protein FdhD low > 101
Pseudomonas stutzeri RCH2 0.48 Psest_4108 seryl-tRNA(sec) selenium transferase 0.29 Psest_3964 formate dehydrogenase family accessory protein FdhD low > 67
Pseudomonas putida KT2440 0.47 PP_0493 selenocysteine synthase 0.31 PP_0257 protein sulfur transferase low > 96
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS04530 L-seryl-tRNA(Sec) selenium transferase 0.37 ABZR86_RS03590 formate dehydrogenase accessory sulfurtransferase FdhD low > 74
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_4952 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.31 Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) low > 87
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS32420 selenocysteine synthase 0.34 BPHYT_RS03240 formate dehydrogenase accessory protein FdhD low > 109
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_3095 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.31 PfGW456L13_408 Formate dehydrogenase chain D (EC 1.2.1.2) low > 87
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS18435 L-seryl-tRNA(Sec) selenium transferase 0.33 QEN71_RS02080 formate dehydrogenase accessory sulfurtransferase FdhD low > 153
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU2883 selA L-seryl-tRNA selenium transferase (TIGR) 0.12 DVU0578 formate dehydrogenase accessory protein FdhD, putative (TIGR) — —

Not shown: 1 genomes with orthologs for b3591 only; 43 genomes with orthologs for b3895 only