Conservation of cofitness between b0677 and b3842 in Escherichia coli BW25113

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0677 nagA N-acetylglucosamine-6-phosphate deacetylase (NCBI) 1.0 b3842 rfaH transcriptional activator RfaH (NCBI) 0.35 11
Escherichia coli ECRC98 1.00 JDDGAC_10815 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 JDDGAC_17890 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECRC99 1.00 KEDOAH_20805 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 KEDOAH_13885 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECRC101 1.00 MCAODC_26380 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 MCAODC_04770 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECRC101 1.00 OKFHMN_07165 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 OKFHMN_14265 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECRC62 1.00 BNILDI_21550 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 BNILDI_05135 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECRC102 1.00 NIAGMN_05220 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 NIAGMN_12020 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECOR27 1.00 NOLOHH_23545 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 NOLOHH_06395 rfaH transcription/translation regulatory transformer protein RfaH 0.76 43
Escherichia coli Nissle 1917 1.00 ECOLIN_RS03615 N-acetylglucosamine-6-phosphate deacetylase 1.00 ECOLIN_RS22150 transcription/translation regulatory transformer protein RfaH 0.82 29
Escherichia coli BL21 1.00 ECD_00634 N-acetylglucosamine-6-phosphate deacetylase 1.00 ECD_03733 transcription antitermination protein 0.74 4
Escherichia coli ECOR38 1.00 HEPCGN_01065 nagA N-acetylglucosamine-6-phosphate deacetylase 1.00 HEPCGN_12895 rfaH transcription/translation regulatory transformer protein RfaH low > 85
Escherichia fergusonii Becca 1.00 EFB2_03426 N-acetylglucosamine-6-phosphate deacetylase 1.00 EFB2_04775 Transcription antitermination protein RfaH low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03038 N-acetylglucosamine-6-phosphate deacetylase 1.00 OHPLBJKB_04211 Transcription antitermination protein RfaH low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF4585 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) 0.91 GFF267 Transcriptional activator RfaH low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2298 N-acetylglucosamine-6-phosphate deacetylase 0.85 EX28DRAFT_4505 transcription elongation factor/antiterminator RfaH low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01323 N-acetylglucosamine-6-phosphate deacetylase 0.85 MPMX20_04440 Transcription antitermination protein RfaH low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS08210 N-acetylglucosamine-6-phosphate deacetylase 0.84 BWI76_RS01340 transcription/translation regulatory transformer protein RfaH — —
Serratia liquefaciens MT49 0.78 IAI46_06085 N-acetylglucosamine-6-phosphate deacetylase 0.76 IAI46_01105 transcription/translation regulatory transformer protein RfaH low > 86
Rahnella sp. WP5 0.78 EX31_RS23260 N-acetylglucosamine-6-phosphate deacetylase 0.73 EX31_RS14590 transcription/translation regulatory transformer protein RfaH low > 89
Pantoea sp. MT58 0.76 IAI47_13885 N-acetylglucosamine-6-phosphate deacetylase 0.76 IAI47_18250 transcription/translation regulatory transformer protein RfaH low > 76
Pectobacterium carotovorum WPP14 0.75 HER17_RS15110 N-acetylglucosamine-6-phosphate deacetylase 0.75 HER17_RS20570 transcription/translation regulatory transformer protein RfaH low > 75
Erwinia tracheiphila SCR3 0.73 LU632_RS16250 nagA N-acetylglucosamine-6-phosphate deacetylase 0.74 LU632_RS23970 rfaH transcription/translation regulatory transformer protein RfaH low > 74
Dickeya dianthicola 67-19 0.73 HGI48_RS06350 N-acetylglucosamine-6-phosphate deacetylase 0.73 HGI48_RS00935 transcription/translation regulatory transformer protein RfaH low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS06695 N-acetylglucosamine-6-phosphate deacetylase 0.73 DZA65_RS00995 transcription/translation regulatory transformer protein RfaH 0.38 69
Dickeya dadantii 3937 0.72 DDA3937_RS06305 N-acetylglucosamine-6-phosphate deacetylase 0.73 DDA3937_RS20290 transcription/translation regulatory transformer protein RfaH low > 74
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_05070 N-acetylglucosamine-6-phosphate deacetylase 0.44 CSW01_05050 transcription/translation regulatory transformer protein RfaH low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS18930 N-acetylglucosamine-6-phosphate deacetylase 0.18 CA265_RS01815 antitermination protein NusG low > 88
Shewanella sp. ANA-3 0.28 Shewana3_3112 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.28 Shewana3_1374 transcription antitermination protein nusG (RefSeq) low > 73
Shewanella oneidensis MR-1 0.28 SO3505 nagA N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.28 SO3194 transcriptional activator rfaH, putative (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.27 Shew_1117 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.27 Shew_1398 NusG antitermination factor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.27 Sama_0946 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.28 Sama_2265 transcriptional activator rfaH, putative (RefSeq) low > 62
Herbaspirillum seropedicae SmR1 0.18 HSERO_RS22760 N-acetylglucosamine-6-phosphate deacetylase 0.30 HSERO_RS02425 transcriptional activator low > 78

Not shown: 39 genomes with orthologs for b0677 only; 8 genomes with orthologs for b3842 only