Conservation of cofitness between b2810 and b3181 in Escherichia coli BW25113

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2810 csdA cysteine sulfinate desulfinase (NCBI) 1.0 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.30 14
Escherichia coli BL21 1.00 ECD_02661 cysteine sulfinate desulfinase 1.00 ECD_03046 transcript cleavage factor low > 60
Escherichia coli ECRC62 1.00 BNILDI_10490 csdA cysteine desulfurase CsdA 1.00 BNILDI_01690 greA transcription elongation factor GreA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00921 Cysteine desulfurase CsdA 1.00 OHPLBJKB_00519 Transcription elongation factor GreA 0.67 56
Escherichia coli ECOR38 0.99 HEPCGN_19360 csdA cysteine desulfurase CsdA 1.00 HEPCGN_16920 greA transcription elongation factor GreA — —
Escherichia coli ECRC101 0.99 MCAODC_10630 csdA cysteine desulfurase CsdA 1.00 MCAODC_08565 greA transcription elongation factor GreA — —
Escherichia coli ECRC101 0.99 OKFHMN_20105 csdA cysteine desulfurase CsdA 1.00 OKFHMN_18045 greA transcription elongation factor GreA — —
Escherichia coli ECRC98 0.99 JDDGAC_23770 csdA cysteine desulfurase CsdA 1.00 JDDGAC_21670 greA transcription elongation factor GreA — —
Escherichia coli ECRC102 0.99 NIAGMN_17875 csdA cysteine desulfurase CsdA 1.00 NIAGMN_15805 greA transcription elongation factor GreA — —
Escherichia coli ECRC99 0.99 KEDOAH_08025 csdA cysteine desulfurase CsdA 1.00 KEDOAH_10105 greA transcription elongation factor GreA — —
Escherichia coli ECOR27 0.99 NOLOHH_11985 csdA cysteine desulfurase CsdA 1.00 NOLOHH_09845 greA transcription elongation factor GreA — —
Escherichia fergusonii Becca 0.98 EFB2_01107 Cysteine desulfurase CsdA 1.00 EFB2_00642 Transcription elongation factor GreA low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS15660 cysteine desulfurase CsdA 1.00 ECOLIN_RS18320 transcription elongation factor GreA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF4867 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA 0.98 GFF2922 Transcription elongation factor GreA low > 78
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2886 cysteine desulfurase, catalytic subunit CsdA 0.97 EX28DRAFT_3232 transcription elongation factor GreA low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03673 Cysteine desulfurase CsdA 0.97 MPMX20_04085 Transcription elongation factor GreA low > 85
Klebsiella michiganensis M5al 0.82 BWI76_RS22965 cysteine sulfinate desulfinase 0.97 BWI76_RS25160 transcription elongation factor GreA low > 92
Pantoea sp. MT58 0.73 IAI47_04015 cysteine desulfurase CsdA 0.86 IAI47_17080 transcription elongation factor GreA low > 76
Serratia liquefaciens MT49 0.71 IAI46_20350 cysteine desulfurase CsdA 0.89 IAI46_01880 transcription elongation factor GreA low > 86
Pectobacterium carotovorum WPP14 0.70 HER17_RS16425 cysteine desulfurase CsdA 0.92 HER17_RS18330 transcription elongation factor GreA — —
Erwinia tracheiphila SCR3 0.69 LU632_RS06240 csdA cysteine desulfurase CsdA 0.79 LU632_RS21165 greA transcription elongation factor GreA low > 74
Rahnella sp. WP5 0.67 EX31_RS13120 cysteine desulfurase CsdA 0.90 EX31_RS08595 transcription elongation factor GreA low > 89
Dickeya dadantii 3937 0.66 DDA3937_RS05040 cysteine desulfurase CsdA 0.90 DDA3937_RS03015 transcription elongation factor GreA — —
Dickeya dianthicola 67-19 0.66 HGI48_RS05045 cysteine desulfurase CsdA 0.90 HGI48_RS03185 transcription elongation factor GreA low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS05385 cysteine desulfurase CsdA 0.90 DZA65_RS03180 transcription elongation factor GreA low > 75
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_11740 cysteine desulfurase CsdA 0.63 CSW01_03330 transcription elongation factor GreA low > 62
Pseudomonas putida KT2440 0.39 PP_1529 Probable cysteine desulfurase 0.60 PP_4722 Transcription elongation factor GreA 0.23 36
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_3076 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA 0.59 Pf1N1B4_1171 Transcription elongation factor GreA — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS06240 cysteine desulfurase 0.59 PFLU_RS25875 transcription elongation factor GreA low > 109
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_4717 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA 0.58 PfGW456L13_5098 Transcription elongation factor GreA — —
Pseudomonas fluorescens SBW25 0.38 PFLU_RS06240 cysteine desulfurase 0.59 PFLU_RS25875 transcription elongation factor GreA low > 109
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_1335 Aminotransferase, class V 0.59 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas stutzeri RCH2 0.37 Psest_1464 Selenocysteine lyase 0.64 Psest_0969 transcription elongation factor GreA low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_1335 Aminotransferase, class V 0.59 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas simiae WCS417 0.37 PS417_06175 cysteine sulfinate desulfinase 0.57 PS417_24035 transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3079 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA 0.61 Pf6N2E2_3363 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_06075 cysteine sulfinate desulfinase 0.61 AO356_07475 transcription elongation factor GreA — —
Pseudomonas sp. RS175 0.36 PFR28_00389 Cysteine desulfurase SufS 0.59 PFR28_00078 Transcription elongation factor GreA — —

Not shown: 0 genomes with orthologs for b2810 only; 60 genomes with orthologs for b3181 only