Conservation of cofitness between b2052 and b0854 in Escherichia coli BW25113

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2052 fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) 1.0 b0854 potF putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) 0.20 13
Escherichia coli BL21 1.00 ECD_01958 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase 1.00 ECD_00859 putrescine ABC transporter periplasmic binding protein low > 60
Escherichia coli ECRC62 1.00 BNILDI_14590 fcl GDP-L-fucose synthase 1.00 BNILDI_20585 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia fergusonii Becca 1.00 EFB2_01802 GDP-L-fucose synthase 0.99 EFB2_03207 Putrescine-binding periplasmic protein low > 86
Escherichia coli ECRC99 1.00 KEDOAH_03800 fcl GDP-L-fucose synthase 0.99 KEDOAH_21950 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECRC98 1.00 JDDGAC_28460 fcl GDP-L-fucose synthase 0.99 JDDGAC_09595 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECRC101 1.00 OKFHMN_24350 fcl GDP-L-fucose synthase 0.99 OKFHMN_05960 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECRC102 1.00 NIAGMN_22295 fcl GDP-L-fucose synthase 0.99 NIAGMN_04005 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECRC101 1.00 MCAODC_20590 fcl GDP-L-fucose synthase 0.99 MCAODC_25175 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECOR27 1.00 NOLOHH_15680 fcl GDP-L-fucose synthase 1.00 NOLOHH_22330 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS12090 GDP-L-fucose synthase 0.99 ECOLIN_RS04550 spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECOR38 0.99 HEPCGN_03050 fcl GDP-L-fucose synthase 0.99 HEPCGN_02070 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_0503 Nucleoside-diphosphate-sugar epimerases 0.93 EX28DRAFT_2099 Spermidine/putrescine-binding periplasmic protein low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03034 GDP-L-fucose synthase 0.94 MPMX20_01495 Putrescine-binding periplasmic protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3876 GDP-L-fucose synthetase (EC 1.1.1.271) 0.96 GFF758 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 78
Pectobacterium carotovorum WPP14 0.77 HER17_RS14535 GDP-L-fucose synthase 0.84 HER17_RS12500 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 75
Pseudomonas stutzeri RCH2 0.70 Psest_1819 Nucleoside-diphosphate-sugar epimerases 0.62 Psest_4284 Spermidine/putrescine-binding periplasmic protein low > 67
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS17885 GDP-L-fucose synthase 0.56 PFLU_RS28775 polyamine ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25 0.67 PFLU_RS17885 GDP-L-fucose synthase 0.56 PFLU_RS28775 polyamine ABC transporter substrate-binding protein low > 109
Castellaniella sp019104865 MT123 0.66 ABCV34_RS12930 GDP-L-fucose synthase 0.47 ABCV34_RS02360 polyamine ABC transporter substrate-binding protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF1841 GDP-L-fucose synthetase (EC 1.1.1.271) 0.34 GFF2035 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 90
Phaeobacter inhibens DSM 17395 0.61 PGA1_65p00300 GDP-L-fucose synthetase Fcl 0.48 PGA1_c34420 putrescine-binding periplasmic protein PotF — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26355 GDP-L-fucose synthase 0.50 QEN71_RS07120 polyamine ABC transporter substrate-binding protein low > 153
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS04005 GDP-L-fucose synthase 0.50 BPHYT_RS11450 ABC transporter substrate-binding protein 0.25 56
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04777 GDP-L-fucose synthase 0.50 H281DRAFT_05180 putrescine transport system substrate-binding protein low > 103
Azospirillum brasilense Sp245 0.53 AZOBR_RS03370 GDP-L-fucose synthase 0.41 AZOBR_RS08845 ABC transporter substrate-binding protein low > 97
Magnetospirillum magneticum AMB-1 0.53 AMB_RS00820 GDP-L-fucose synthase 0.45 AMB_RS13210 polyamine ABC transporter substrate-binding protein low > 64
Azospirillum sp. SherDot2 0.52 MPMX19_05629 GDP-L-fucose synthase 0.39 MPMX19_04883 Spermidine-binding periplasmic protein SpuE low > 112
Rhodospirillum rubrum S1H 0.51 Rru_A0254 NAD-dependent epimerase/dehydratase (NCBI) 0.50 Rru_A1018 extracellular solute-binding protein, family 1 (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.50 Dshi_4142 NAD-dependent epimerase/dehydratase (RefSeq) 0.07 Dshi_2325 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00471 GDP-L-fucose synthase 0.25 CCNA_03239 spermidine/putrescine-binding protein low > 67
Caulobacter crescentus NA1000 0.50 CCNA_00471 GDP-L-fucose synthase 0.25 CCNA_03239 spermidine/putrescine-binding protein low > 66
Agrobacterium fabrum C58 0.48 Atu4790 GDP-fucose synthetase 0.54 Atu0609 ABC transporter, substrate binding protein (putrescine) low > 89
Dickeya dadantii 3937 0.23 DDA3937_RS18680 GDP-L-fucose synthase 0.82 DDA3937_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 74
Dickeya dianthicola ME23 0.23 DZA65_RS19745 GDP-L-fucose synthase 0.81 DZA65_RS09790 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 75
Dickeya dianthicola 67-19 0.23 HGI48_RS18610 GDP-L-fucose synthase 0.81 HGI48_RS09480 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 71

Not shown: 22 genomes with orthologs for b2052 only; 26 genomes with orthologs for b0854 only