Conservation of cofitness between SMc01428 and SMc00820 in Sinorhizobium meliloti 1021

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc01428 cold shock transcription regulator protein 1.0 SMc00820 transcriptional regulator 0.30 17
Bosea sp. OAE506 0.84 ABIE41_RS07590 cold-shock protein 0.52 ABIE41_RS23080 LysR substrate-binding domain-containing protein low > 77
Rhodopseudomonas palustris CGA009 0.84 TX73_019030 cold-shock protein 0.27 TX73_013870 LysR substrate-binding domain-containing protein — —
Caulobacter crescentus NA1000 Δfur 0.79 CCNA_02997 cold shock protein CspA 0.29 CCNA_03625 transcriptional regulator CztR low > 67
Caulobacter crescentus NA1000 0.79 CCNA_02997 cold shock protein CspA 0.29 CCNA_03625 transcriptional regulator CztR low > 66
Azospirillum brasilense Sp245 0.78 AZOBR_RS03590 cold-shock protein 0.33 AZOBR_RS00870 LysR family transcriptional regulator low > 97
Dinoroseobacter shibae DFL-12 0.66 Dshi_0009 cold-shock DNA-binding domain protein (RefSeq) 0.27 Dshi_2125 transcriptional regulator, LysR family (RefSeq) low > 64
Pseudomonas simiae WCS417 0.64 PS417_19715 cold-shock protein 0.30 PS417_08510 LysR family transcriptional regulator — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS17025 cold-shock protein 0.24 LRK54_RS15435 LysR substrate-binding domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.58 LRK55_RS16740 cold-shock protein 0.24 LRK55_RS15155 LysR substrate-binding domain-containing protein — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS02995 cold shock domain-containing protein CspD 0.29 QEN71_RS30705 LysR family transcriptional regulator low > 153
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS15720 cold-shock protein 0.29 BPHYT_RS10150 LysR family transcriptional regulator — —
Escherichia coli ECOR38 0.55 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE 0.25 HEPCGN_22035 lrhA transcriptional regulator LrhA low > 85
Escherichia coli ECRC101 0.55 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE 0.25 MCAODC_13870 lrhA transcriptional regulator LrhA — —
Escherichia coli ECRC98 0.55 JDDGAC_11065 cspE transcription antiterminator/RNA stability regulator CspE 0.25 JDDGAC_26795 lrhA transcriptional regulator LrhA — —
Escherichia coli ECRC102 0.55 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE 0.25 NIAGMN_20600 lrhA transcriptional regulator LrhA — —
Escherichia fergusonii Becca 0.55 EFB2_03468 Cold shock-like protein CspE 0.25 EFB2_01569 HTH-type transcriptional regulator HdfR low > 86
Escherichia coli BW25113 0.55 b0623 cspE cold shock protein E (NCBI) 0.25 b2289 lrhA DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) low > 76
Escherichia coli ECRC101 0.55 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE 0.25 OKFHMN_22830 lrhA transcriptional regulator LrhA — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03400 transcription antiterminator/RNA stability regulator CspE 0.24 ECOLIN_RS13290 transcriptional regulator LrhA low > 52
Escherichia coli ECOR27 0.55 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE 0.25 NOLOHH_14450 lrhA transcriptional regulator LrhA low > 57
Escherichia coli ECRC62 0.55 BNILDI_21805 cspE transcription antiterminator/RNA stability regulator CspE 0.25 BNILDI_13370 lrhA transcriptional regulator LrhA — —
Escherichia coli ECRC99 0.55 KEDOAH_20550 cspE transcription antiterminator/RNA stability regulator CspE 0.25 KEDOAH_05365 lrhA transcriptional regulator LrhA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03082 Cold shock-like protein CspE 0.25 OHPLBJKB_01416 HTH-type transcriptional regulator HdfR low > 73
Escherichia coli BL21 0.55 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein 0.25 ECD_02214 transcriptional repressor of flagellar, motility and chemotaxis genes low > 60
Serratia liquefaciens MT49 0.54 IAI46_05870 transcription antiterminator/RNA stability regulator CspE 0.28 IAI46_00315 LysR family transcriptional regulator low > 86
Klebsiella michiganensis M5al 0.54 BWI76_RS07980 cold-shock protein 0.25 BWI76_RS20200 transcriptional regulator LrhA — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS21685 cold-shock protein 0.30 PFLU_RS08460 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.52 PFLU_RS21685 cold-shock protein 0.30 PFLU_RS08460 LysR family transcriptional regulator low > 109
Alteromonas macleodii MIT1002 0.51 MIT1002_01832 Cold shock-like protein CspD 0.25 MIT1002_00554 HTH-type transcriptional regulator YofA low > 70
Pseudomonas sp. S08-1 0.50 OH686_17410 Cold shock protein of CSP family 0.31 OH686_22455 Transcriptional regulator, LysR family — —

Not shown: 27 genomes with orthologs for SMc01428 only; 20 genomes with orthologs for SMc00820 only