| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_2475 | | phosphate ABC transporter substrate-binding protein, PhoT family | 1.0 | Psyr_1274 | | transferase hexapeptide repeat protein | 0.36 | 8 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_2475 | | phosphate ABC transporter substrate-binding protein, PhoT family | 1.00 | Psyr_1274 | | transferase hexapeptide repeat protein | low | > 86 |
| Pseudomonas simiae WCS417 | 0.65 | PS417_16985 | | membrane protein | 0.87 | PS417_22960 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS18935 | | OmpA family protein | 0.87 | PFLU_RS24620 | | gamma carbonic anhydrase family protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS18935 | | OmpA family protein | 0.87 | PFLU_RS24620 | | gamma carbonic anhydrase family protein | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_3994 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | 0.85 | Pf1N1B4_882 | | carbonic anhydrase, family 3 | low | > 87 |
| Pseudomonas sp. RS175 | 0.64 | PFR28_02755 | | hypothetical protein | 0.85 | PFR28_03507 | | Protein YrdA | low | > 88 |
| Pseudomonas sp. DMC3 | 0.63 | GFF1480 | | hypothetical protein | 0.86 | GFF1974 | | Protein YrdA | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.63 | GEMAOFIL_03705 | | hypothetical protein | 0.83 | GEMAOFIL_04745 | | Protein YrdA | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_141 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | 0.86 | Pf6N2E2_5438 | | carbonic anhydrase, family 3 | low | > 103 |
| Pseudomonas orientalis W4I3 | 0.62 | QF045_RS18660 | | phosphate ABC transporter substrate-binding/OmpA family protein | 0.85 | QF045_RS25155 | | gamma carbonic anhydrase family protein | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_27880 | | hypothetical protein | 0.85 | AO353_04425 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_01065 | | hypothetical protein | 0.85 | AO356_17575 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.61 | PfGW456L13_2598 | | Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | 0.84 | PfGW456L13_4825 | | carbonic anhydrase, family 3 | low | > 87 |
| Pseudomonas sp. S08-1 | 0.61 | OH686_00900 | | Phosphate-binding protein | 0.85 | OH686_17690 | | Carbonic anhydrase-like protein | low | > 80 |
| Pseudomonas segetis P6 | 0.60 | ACVTMO_RS11830 | | substrate-binding domain-containing protein | 0.87 | ACVTMO_RS07730 | | gamma carbonic anhydrase family protein | low | > 75 |
| Pseudomonas aeruginosa PUPa3 | 0.56 | DQ20_RS35790 | | substrate-binding domain-containing protein | 0.83 | DQ20_RS42920 | | gamma carbonic anhydrase family protein | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.56 | DY961_RS04890 | | substrate-binding domain-containing protein | 0.82 | DY961_RS14200 | | gamma carbonic anhydrase family protein | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.56 | IKLFDK_12525 | | PBP superfamily domain-containing protein | 0.83 | IKLFDK_19160 | | Uncharacterized protein PA3753 | low | > 98 |
| Pseudomonas sp. SVBP6 | 0.55 | COO64_RS24410 | | substrate-binding domain-containing protein | 0.86 | COO64_RS04840 | | gamma carbonic anhydrase family protein | low | > 93 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_2129 | | ABC-type phosphate transport system, periplasmic component | 0.85 | Psest_3139 | | Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily | low | > 67 |
| Pseudomonas sp. BP01 | 0.51 | JOY50_RS04705 | | substrate-binding domain-containing protein | 0.83 | JOY50_RS11635 | | gamma carbonic anhydrase family protein | low | > 84 |
| Pseudomonas putida KT2440 | 0.51 | PP_3818 | | Periplamic phosphate-binding protein | 0.83 | PP_1454 | | conserved protein of unknown function | low | > 96 |
| Marinobacter adhaerens HP15 | 0.38 | HP15_3270 | | OmpA/MotB domain protein | 0.62 | HP15_1243 | | transferase hexapeptide repeat containing protein | low | > 73 |
| Phaeobacter inhibens DSM 17395 | 0.17 | PGA1_c34560 | | ABC-type phosphate transport system, periplasmic component | 0.52 | PGA1_c15820 | | putative phenylacetic acid degradation protein | low | > 62 |
Not shown: 2 genomes with orthologs for Psyr_2475 only; 37 genomes with orthologs for Psyr_1274 only