Conservation of cofitness between PP_1906 and PP_4124 in Pseudomonas putida KT2440

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1906 ribosomal large subunit pseudouridine synthase C 1.0 PP_4124 NADH-quinone oxidoreductase subunit G 0.33 16
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.89 Psyr_3202 NADH dehydrogenase subunit G low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.89 Psyr_3202 NADH dehydrogenase subunit G — —
Pseudomonas sp. RS175 0.90 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.91 PFR28_02632 NADH-quinone oxidoreductase subunit G — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.90 Pf6N2E2_272 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20125 23S rRNA pseudouridylate synthase 0.90 AO356_22045 NADH dehydrogenase — —
Pseudomonas simiae WCS417 0.88 PS417_21480 23S rRNA pseudouridylate synthase 0.90 PS417_16600 NADH dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.80 Pf1N1B4_4035 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.90 PFLU_RS18640 NADH-quinone oxidoreductase subunit NuoG low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.90 PFLU_RS18640 NADH-quinone oxidoreductase subunit NuoG low > 109
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_01405 23S rRNA pseudouridylate synthase 0.90 AO353_27765 NADH dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.90 PfGW456L13_2628 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) — —
Pseudomonas sp. S08-1 0.86 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.79 OH686_00130 NADH dehydrogenase (quinone), G subunit low > 80
Pantoea sp. MT58 0.58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.66 IAI47_06385 NADH-quinone oxidoreductase subunit NuoG low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 HER17_RS07150 NADH-quinone oxidoreductase subunit NuoG low > 75
Rahnella sp. WP5 0.56 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 EX31_RS19410 NADH-quinone oxidoreductase subunit NuoG 0.54 61
Erwinia tracheiphila SCR3 0.56 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 LU632_RS07990 nuoG NADH-quinone oxidoreductase subunit NuoG low > 74
Enterobacter sp. TBS_079 0.56 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.67 MPMX20_03213 NADH-quinone oxidoreductase subunit G low > 85
Escherichia coli BW25113 0.56 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.67 b2283 nuoG NADH:ubiquinone oxidoreductase, chain G (RefSeq) 0.23 29
Escherichia coli ECOR38 0.56 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 HEPCGN_22070 nuoG NADH-quinone oxidoreductase subunit NuoG low > 85
Escherichia fergusonii Becca 0.56 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.66 EFB2_01576 NADH-quinone oxidoreductase subunit G low > 86
Escherichia coli ECOR27 0.56 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 NOLOHH_14485 nuoG NADH-quinone oxidoreductase subunit NuoG low > 57
Escherichia coli ECRC62 0.56 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 BNILDI_13405 nuoG NADH-quinone oxidoreductase subunit NuoG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.67 OHPLBJKB_01423 NADH-quinone oxidoreductase subunit G low > 73
Escherichia coli BL21 0.56 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.67 ECD_02208 NADH:ubiquinone oxidoreductase, chain G 0.72 43
Escherichia coli Nissle 1917 0.55 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 ECOLIN_RS13260 NADH-quinone oxidoreductase subunit NuoG low > 52
Escherichia coli ECRC102 0.55 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 NIAGMN_20635 nuoG NADH-quinone oxidoreductase subunit NuoG — —
Escherichia coli ECRC101 0.55 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 OKFHMN_22865 nuoG NADH-quinone oxidoreductase subunit NuoG — —
Escherichia coli ECRC101 0.55 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 MCAODC_13905 nuoG NADH-quinone oxidoreductase subunit NuoG — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.66 GFF1886 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) low > 78
Escherichia coli ECRC99 0.55 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 KEDOAH_05330 nuoG NADH-quinone oxidoreductase subunit NuoG — —
Escherichia coli ECRC98 0.55 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 JDDGAC_26830 nuoG NADH-quinone oxidoreductase subunit NuoG — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.67 EX28DRAFT_0327 NADH-quinone oxidoreductase, chain G low > 76
Klebsiella michiganensis M5al 0.55 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.68 BWI76_RS20165 NADH-quinone oxidoreductase subunit G low > 92
Serratia liquefaciens MT49 0.54 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 IAI46_17685 NADH-quinone oxidoreductase subunit NuoG low > 86
Dickeya dadantii 3937 0.54 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.66 DDA3937_RS14310 NADH-quinone oxidoreductase subunit NuoG — —
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.66 HGI48_RS14285 NADH-quinone oxidoreductase subunit NuoG low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.66 DZA65_RS14960 NADH-quinone oxidoreductase subunit NuoG — —
Acinetobacter radioresistens SK82 0.42 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.60 MPMX26_02550 NADH-quinone oxidoreductase subunit G — —

Not shown: 46 genomes with orthologs for PP_1906 only; 3 genomes with orthologs for PP_4124 only