Conservation of cofitness between PP_4224 and PP_1655 in Pseudomonas putida KT2440

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4224 Sensor histidine kinase 1.0 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.19 5
Pseudomonas sp. RS175 0.65 PFR28_01031 Sensor protein QseC 0.72 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_2396 Sensor histidine kinase 0.72 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 103
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS21480 two-component sensor histidine kinase 0.73 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens SBW25 0.63 PFLU_RS21480 two-component sensor histidine kinase 0.73 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_207 Sensor histidine kinase 0.72 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 — —
Pseudomonas simiae WCS417 0.62 PS417_19515 histidine kinase 0.72 PS417_20155 23S rRNA methyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_2300 Sensor histidine kinase 0.69 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_19375 histidine kinase 0.69 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_02860 histidine kinase 0.72 AO356_19055 23S rRNA methyltransferase low > 104
Pseudomonas stutzeri RCH2 0.53 Psest_1601 Signal transduction histidine kinase 0.69 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Alteromonas macleodii MIT1002 0.26 MIT1002_03259 Sensor protein QseC 0.31 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 70
Escherichia coli ECOR38 0.20 HEPCGN_17735 qseC two-component system sensor histidine kinase QseC 0.35 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECRC102 0.20 NIAGMN_16640 qseC two-component system sensor histidine kinase QseC 0.34 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC99 0.20 KEDOAH_09270 qseC two-component system sensor histidine kinase QseC 0.34 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECRC101 0.20 MCAODC_09390 qseC two-component system sensor histidine kinase QseC 0.34 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECRC100 0.20 OKFHMN_18875 qseC two-component system sensor histidine kinase QseC 0.34 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Escherichia coli ECRC62 0.20 BNILDI_00860 qseC two-component system sensor histidine kinase QseC 0.34 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Escherichia coli ECRC98 0.20 JDDGAC_22510 qseC two-component system sensor histidine kinase QseC 0.34 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Escherichia coli ECOR27 0.20 NOLOHH_10655 qseC two-component system sensor histidine kinase QseC 0.34 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Escherichia coli BL21 0.20 ECD_02898 quorum sensing sensory histidine kinase in two-component regulatory system with QseB 0.34 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.57 12
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_00676 Sensor protein QseC 0.34 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 73
Escherichia coli BW25113 0.20 b3026 qseC sensory histidine kinase in two-component regulatory system with QseB (NCBI) 0.34 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli Nissle 1917 0.20 ECOLIN_RS17430 quorum sensing histidine kinase QseC 0.34 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 55
Escherichia fergusonii Becca 0.19 EFB2_00787 Sensor protein QseC 0.34 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF3139 Sensory histidine kinase QseC 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 78
Paraburkholderia bryophila 376MFSha3.1 0.17 H281DRAFT_01149 two-component system, OmpR family, sensor histidine kinase QseC 0.33 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.17 A4249_RS11490 sensor histidine kinase N-terminal domain-containing protein 0.12 A4249_RS08425 class I SAM-dependent RNA methyltransferase low > 48
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS14150 ATP-binding protein 0.35 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 59
Rhodanobacter denitrificans MT42 0.16 LRK55_RS13870 ATP-binding protein 0.36 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 63
Klebsiella michiganensis M5al 0.16 BWI76_RS24340 two-component sensor histidine kinase 0.33 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase low > 92
Acinetobacter radioresistens SK82 0.16 MPMX26_03162 Sensor protein QseC 0.38 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 36
Rhodanobacter sp. FW510-T8 0.15 OKGIIK_00865 Sensor protein QseC 0.35 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 52
Agrobacterium fabrum C58 0.13 Atu4018 two component sensor kinase 0.16 Atu0735 RNA methyltransferase low > 89

Not shown: 0 genomes with orthologs for PP_4224 only; 65 genomes with orthologs for PP_1655 only