Conservation of cofitness between PFLU_RS17595 and PFLU_RS04570 in Pseudomonas fluorescens SBW25

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS17595 GDP-mannose pyrophosphatase 1.0 PFLU_RS04570 class I SAM-dependent methyltransferase 0.46 17
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS17595 GDP-mannose pyrophosphatase 1.00 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas simiae WCS417 0.89 PS417_15610 GDP-mannose pyrophosphatase 0.98 PS417_04525 16S rRNA methyltransferase low > 88
Enterobacter sp. TBS_079 0.66 MPMX20_02285 GDP-mannose pyrophosphatase NudK 0.27 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_1179 nudix-type nucleoside diphosphatase, YffH/AdpP family 0.28 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Klebsiella michiganensis M5al 0.62 BWI76_RS19825 DNA mismatch repair protein MutT 0.27 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase low > 92
Pantoea sp. MT58 0.61 IAI47_09965 NUDIX domain-containing protein 0.28 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_2669 GDP-mannose pyrophosphatase YffH 0.89 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Dickeya dianthicola ME23 0.61 DZA65_RS10275 NUDIX domain-containing protein 0.26 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Dickeya dadantii 3937 0.61 DDA3937_RS09935 NUDIX domain-containing protein 0.28 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Dickeya dianthicola 67-19 0.61 HGI48_RS09940 NUDIX domain-containing protein 0.26 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 71
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_03645 nucleotide-sugar pyrophosphatase 0.13 CCNA_01914 16S rRNA m(2)G 1207 methyltransferase RsmC low > 67
Caulobacter crescentus NA1000 0.60 CCNA_03645 nucleotide-sugar pyrophosphatase 0.13 CCNA_01914 16S rRNA m(2)G 1207 methyltransferase RsmC low > 66
Serratia liquefaciens MT49 0.58 IAI46_11585 NUDIX domain-containing protein 0.28 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 86
Rahnella sp. WP5 0.57 EX31_RS22815 GDP-mannose pyrophosphatase NudK 0.26 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 89
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_27560 GDP-mannose pyrophosphatase 0.90 AO353_14995 16S rRNA methyltransferase low > 101
Pectobacterium carotovorum WPP14 0.56 HER17_RS17390 GDP-mannose pyrophosphatase NudK 0.25 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Pseudomonas sp. RS175 0.52 PFR28_04570 GDP-mannose pyrophosphatase NudK 0.90 PFR28_03623 Ribosomal RNA small subunit methyltransferase C low > 88
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_4229 GDP-mannose pyrophosphatase YffH 0.90 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 103
Escherichia coli Nissle 1917 0.50 ECOLIN_RS14075 GDP-mannose pyrophosphatase NudK 0.28 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 55
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_11785 GDP-mannose pyrophosphatase 0.90 AO356_06940 16S rRNA methyltransferase low > 104
Escherichia fergusonii Becca 0.50 EFB2_01421 GDP-mannose pyrophosphatase NudK 0.28 EFB2_04076 Ribosomal RNA small subunit methyltransferase C low > 86
Escherichia coli ECRC102 0.50 NIAGMN_19755 nudK GDP-mannose pyrophosphatase NudK 0.28 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC101 0.50 MCAODC_12515 nudK GDP-mannose pyrophosphatase NudK 0.28 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF2192 GDP-mannose pyrophosphatase YffH 0.28 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 78
Escherichia coli ECRC99 0.50 KEDOAH_06235 nudK GDP-mannose pyrophosphatase NudK 0.28 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC98 0.50 JDDGAC_25930 nudK GDP-mannose pyrophosphatase NudK 0.28 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 86
Escherichia coli ECRC100 0.50 OKFHMN_21985 nudK GDP-mannose pyrophosphatase NudK 0.28 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_01264 GDP-mannose pyrophosphatase NudK 0.27 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C low > 73
Escherichia coli BL21 0.50 ECD_02358 GDP-mannose pyrophosphatase 0.28 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR27 0.50 NOLOHH_13665 nudK GDP-mannose pyrophosphatase NudK 0.28 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli ECRC62 0.50 BNILDI_12475 nudK GDP-mannose pyrophosphatase NudK 0.27 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_4078 GDP-mannose pyrophosphatase YffH 0.90 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Escherichia coli BW25113 0.50 b2467 yffH predicted NUDIX hydrolase (NCBI) 0.28 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.50 HEPCGN_21155 nudK GDP-mannose pyrophosphatase NudK 0.27 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Rhizobium sp. OAE497 0.41 ABIE40_RS06530 NUDIX domain-containing protein 0.11 ABIE40_RS00360 class I SAM-dependent methyltransferase low > 107

Not shown: 11 genomes with orthologs for PFLU_RS17595 only; 13 genomes with orthologs for PFLU_RS04570 only