Conservation of cofitness between MCAODC_14410 and MCAODC_18035 in Escherichia coli ECRC101

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC101 1.0 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.0 MCAODC_18035 punC purine nucleoside transporter PunC 0.60 16
Escherichia coli BL21 1.00 ECD_02113 16S rRNA pseudouridine(516) synthase 1.00 ECD_01631 putative arabinose efflux transporter — —
Escherichia coli ECRC102 1.00 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 NIAGMN_00690 punC purine nucleoside transporter PunC — —
Escherichia coli ECOR27 1.00 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 NOLOHH_17895 punC purine nucleoside transporter PunC low > 75
Escherichia coli ECRC99 1.00 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 KEDOAH_00735 punC purine nucleoside transporter PunC — —
Escherichia coli ECRC98 1.00 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 JDDGAC_01965 punC purine nucleoside transporter PunC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 1.00 OHPLBJKB_02064 Inner membrane transport protein YdhC low > 73
Escherichia coli ECRC62 1.00 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 BNILDI_16685 punC purine nucleoside transporter PunC low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 1.00 ECOLIN_RS09255 purine nucleoside transporter PunC — —
Escherichia fergusonii Becca 1.00 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 1.00 EFB2_02332 Inner membrane transport protein YdhC low > 86
Escherichia coli ECRC100 1.00 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 OKFHMN_27375 punC purine nucleoside transporter PunC low > 80
Escherichia coli BW25113 1.00 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.99 b1660 ydhC predicted transporter (NCBI) low > 76
Escherichia coli ECOR38 0.99 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.99 HEPCGN_05760 punC purine nucleoside transporter PunC 0.64 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.83 GFF3616 Putative transport protein low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0378 pseudouridine synthase 0.76 EX28DRAFT_1657 drug resistance transporter, Bcr/CflA subfamily low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.76 MPMX20_01976 Inner membrane transport protein YdhC low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS19810 16S rRNA pseudouridine(516) synthase 0.69 BWI76_RS16520 Bcr/CflA family multidrug efflux MFS transporter — —
Pantoea sp. MT58 0.84 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.55 IAI47_10805 Bcr/CflA family multidrug efflux MFS transporter low > 76
Serratia liquefaciens MT49 0.83 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.58 IAI46_11230 Bcr/CflA family multidrug efflux MFS transporter low > 86
Erwinia tracheiphila SCR3 0.82 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.54 LU632_RS11180 Bcr/CflA family multidrug efflux MFS transporter low > 74
Rahnella sp. WP5 0.79 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.56 EX31_RS13840 Bcr/CflA family multidrug efflux MFS transporter low > 89
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.34 CSW01_13985 Bcr/CflA family drug resistance efflux transporter low > 62
Shewanella loihica PV-4 0.54 Shew_2975 pseudouridine synthase (RefSeq) 0.30 Shew_2012 inner membrane transport protein YdhC (RefSeq) low > 60
Shewanella sp. ANA-3 0.54 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.36 Shewana3_2062 inner membrane transport protein YdhC (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.33 Sama_1784 inner membrane transport protein YdhC (RefSeq) low > 62
Pseudomonas simiae WCS417 0.42 PS417_07010 pseudouridine synthase 0.52 PS417_08035 adenine transporter (MFS superfamily) (from data) low > 88
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS07085 pseudouridine synthase 0.52 PFLU_RS08005 Bcr/CflA family multidrug efflux MFS transporter low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS07085 pseudouridine synthase 0.52 PFLU_RS08005 Bcr/CflA family multidrug efflux MFS transporter low > 109
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_17535 16S rRNA pseudouridine(516) synthase 0.15 AO353_08335 MFS transporter low > 101

Not shown: 34 genomes with orthologs for MCAODC_14410 only; 2 genomes with orthologs for MCAODC_18035 only