Conservation of cofitness between MCAODC_10705 and MCAODC_08240 in Escherichia coli ECRC101

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC101 1.0 MCAODC_10705 sdaC HAAAP family serine/threonine permease SdaC 1.0 MCAODC_08240 csrD RNase E specificity factor CsrD 0.64 6
Escherichia coli ECRC62 1.00 BNILDI_10565 sdaC HAAAP family serine/threonine permease SdaC 0.99 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli BW25113 1.00 b2796 sdaC predicted serine transporter (NCBI) 1.00 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_20180 sdaC HAAAP family serine/threonine permease SdaC 1.00 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00935 Serine transporter 1.00 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia coli ECRC99 1.00 KEDOAH_07950 sdaC HAAAP family serine/threonine permease SdaC 1.00 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC102 1.00 NIAGMN_17950 sdaC HAAAP family serine/threonine permease SdaC 1.00 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli BL21 1.00 ECD_02641 putative serine transporter 1.00 ECD_03111 targeting factor for csrBC sRNA degradation 0.76 1
Escherichia coli ECOR27 1.00 NOLOHH_12060 sdaC HAAAP family serine/threonine permease SdaC 1.00 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECOR38 1.00 HEPCGN_19435 sdaC HAAAP family serine/threonine permease SdaC 0.99 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC98 1.00 JDDGAC_23845 sdaC HAAAP family serine/threonine permease SdaC 1.00 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15590 HAAAP family serine/threonine permease SdaC 0.99 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Escherichia fergusonii Becca 1.00 EFB2_01121 Serine transporter 0.99 EFB2_00579 RNase E specificity factor CsrD low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF4852 Serine transporter 0.85 GFF2133 RNase E specificity factor CsrD low > 78
Klebsiella michiganensis M5al 0.94 BWI76_RS22875 serine transporter 0.77 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2878 serine transporter 0.79 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_03666 Serine transporter 0.79 MPMX20_04158 RNase E specificity factor CsrD low > 85
Serratia liquefaciens MT49 0.84 IAI46_08295 HAAAP family serine/threonine permease 0.56 IAI46_22725 RNase E specificity factor CsrD low > 86
Pantoea sp. MT58 0.82 IAI47_14110 HAAAP family serine/threonine permease 0.51 IAI47_02430 RNase E specificity factor CsrD low > 76
Pectobacterium carotovorum WPP14 0.79 HER17_RS06465 HAAAP family serine/threonine permease 0.52 HER17_RS20175 RNase E specificity factor CsrD low > 75
Rahnella sp. WP5 0.78 EX31_RS04220 HAAAP family serine/threonine permease 0.48 EX31_RS12230 RNase E specificity factor CsrD low > 89
Dickeya dadantii 3937 0.76 DDA3937_RS15115 HAAAP family serine/threonine permease 0.51 DDA3937_RS01425 RNase E specificity factor CsrD 0.45 9
Dickeya dianthicola ME23 0.76 DZA65_RS16000 HAAAP family serine/threonine permease 0.52 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Dickeya dianthicola 67-19 0.76 HGI48_RS15195 HAAAP family serine/threonine permease 0.52 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Erwinia tracheiphila SCR3 0.75 LU632_RS24910 HAAAP family serine/threonine permease 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD low > 74
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_15495 serine/threonine protein kinase 0.09 AO353_11170 hypothetical protein low > 101
Pseudomonas putida KT2440 0.60 PP_3589 serine:H+ symport permease, threonine-insensitive 0.07 PP_0165 GGDEF domain protein low > 96
Shewanella sp. ANA-3 0.55 Shewana3_3365 serine transporter, putative (RefSeq) 0.19 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO0919 serine transporter, putative (NCBI ptt file) 0.20 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) 0.30 55
Shewanella loihica PV-4 0.54 Shew_0739 aromatic amino acid permease (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60
Shewanella amazonensis SB2B 0.54 Sama_2772 amino acid transporter, transmembrane (RefSeq) 0.19 Sama_0449 regulatory protein CsrD (RefSeq) 0.27 60
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_08325 serine transporter 0.26 CSW01_02100 RNase E specificity factor CsrD low > 62

Not shown: 10 genomes with orthologs for MCAODC_10705 only; 0 genomes with orthologs for MCAODC_08240 only