| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECRC98 | 1.0 | JDDGAC_09800 | ldtB | L,D-transpeptidase | 1.0 | JDDGAC_07130 | mfd | transcription-repair coupling factor | 0.96 | 2 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_01875 | ldtB | L,D-transpeptidase | 1.00 | HEPCGN_24015 | mfd | transcription-repair coupling factor | 0.68 | 26 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_20795 | ldtB | L,D-transpeptidase | 1.00 | BNILDI_19160 | mfd | transcription-repair coupling factor | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_04210 | ldtB | L,D-transpeptidase | 1.00 | NIAGMN_24360 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_25380 | ldtB | L,D-transpeptidase | 1.00 | MCAODC_22830 | mfd | transcription-repair coupling factor | 0.78 | 5 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_21745 | ldtB | L,D-transpeptidase | 1.00 | KEDOAH_24285 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli BW25113 | 1.00 | b0819 | ybiS | hypothetical protein (NCBI) | 0.98 | b1114 | mfd | transcription-repair coupling factor (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_06165 | ldtB | L,D-transpeptidase | 1.00 | OKFHMN_03470 | mfd | transcription-repair coupling factor | 0.72 | 16 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_22515 | ldtB | L,D-transpeptidase | 1.00 | NOLOHH_20995 | mfd | transcription-repair coupling factor | 0.75 | 16 |
| Escherichia coli BL21 | 1.00 | ECD_00786 | | L,D-transpeptidase linking Lpp to murein | 0.98 | ECD_01110 | | transcription-repair coupling factor | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02894 | | putative L,D-transpeptidase YbiS | 1.00 | OHPLBJKB_02552 | | Transcription-repair-coupling factor | low | > 73 |
| Escherichia fergusonii Becca | 1.00 | EFB2_03286 | | putative L,D-transpeptidase YbiS | 1.00 | EFB2_02861 | | Transcription-repair-coupling factor | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.94 | GFF716 | | L,D-transpeptidase YbiS | 0.95 | GFF3397 | | Transcription-repair coupling factor | 0.71 | 25 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS09030 | | transpeptidase | 0.92 | BWI76_RS11205 | | transcription-repair coupling factor | low | > 92 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_01456 | | putative L,D-transpeptidase YbiS | 0.91 | MPMX20_01795 | | Transcription-repair-coupling factor | low | > 85 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2148 | | Uncharacterized protein conserved in bacteria | 0.91 | EX28DRAFT_1816 | | transcription-repair coupling factor (mfd) | low | > 76 |
| Serratia liquefaciens MT49 | 0.73 | IAI46_02600 | | L,D-transpeptidase family protein | 0.82 | IAI46_10320 | | transcription-repair coupling factor | low | > 86 |
| Rahnella sp. WP5 | 0.73 | EX31_RS10780 | | L,D-transpeptidase family protein | 0.81 | EX31_RS24520 | | transcription-repair coupling factor | low | > 89 |
| Pantoea sp. MT58 | 0.72 | IAI47_13415 | | L,D-transpeptidase family protein | 0.82 | IAI47_11975 | | transcription-repair coupling factor | low | > 76 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS03570 | | L,D-transpeptidase family protein | 0.81 | DDA3937_RS13000 | | transcription-repair coupling factor | low | > 74 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS03790 | | L,D-transpeptidase family protein | 0.80 | DZA65_RS13530 | | transcription-repair coupling factor | low | > 75 |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS03670 | | L,D-transpeptidase family protein | 0.80 | HGI48_RS13065 | | transcription-repair coupling factor | 0.92 | 3 |
| Pectobacterium carotovorum WPP14 | 0.68 | HER17_RS17580 | | L,D-transpeptidase family protein | 0.83 | HER17_RS08775 | | transcription-repair coupling factor | low | > 75 |
| Shewanella amazonensis SB2B | 0.62 | Sama_0726 | | ErfK/YbiS/YcfS/YnhG (RefSeq) | 0.54 | Sama_1330 | | transcription-repair coupling factor (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_0844 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | 0.55 | Shewana3_2289 | | transcription-repair coupling factor (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.59 | SO3748 | | LysM domain protein (NCBI ptt file) | 0.55 | SO2255 | mfd | transcription-repair coupling factor (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.33 | Pf6N2E2_2474 | | ErfK/YbiS/YcfS/YnhG family protein | 0.52 | Pf6N2E2_2278 | | Transcription-repair coupling factor | low | > 103 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_01780 | | L,D-transpeptidase | 0.54 | OH686_21990 | | transcription-repair coupling factor | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_2221 | | ErfK/YbiS/YcfS/YnhG family protein | 0.53 | PfGW456L13_4027 | | Transcription-repair coupling factor | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_03215 | | hypothetical protein | 0.52 | AO356_02270 | | transcription-repair coupling factor | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_292 | | ErfK/YbiS/YcfS/YnhG family protein | 0.53 | Pf1N1B4_3916 | | Transcription-repair coupling factor | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_2334 | | Uncharacterized protein conserved in bacteria | 0.54 | Psest_1653 | | transcription-repair coupling factor (mfd) | low | > 67 |
Not shown: 1 genomes with orthologs for JDDGAC_09800 only; 55 genomes with orthologs for JDDGAC_07130 only