Conservation of cofitness between IAI46_01880 and IAI46_19570 in Serratia liquefaciens MT49

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_01880 transcription elongation factor GreA 1.0 IAI46_19570 SoxR-reducing system protein RseC 0.51 13
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF2922 Transcription elongation factor GreA 0.54 GFF2110 Sigma factor RpoE regulatory protein RseC 0.74 36
Klebsiella michiganensis M5al 0.89 BWI76_RS25160 transcription elongation factor GreA 0.54 BWI76_RS21340 SoxR reducing system protein RseC low > 92
Rahnella sp. WP5 0.89 EX31_RS08595 transcription elongation factor GreA 0.66 EX31_RS21815 SoxR-reducing system protein RseC low > 89
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3232 transcription elongation factor GreA 0.56 EX28DRAFT_0075 positive regulator of sigma(E), RseC/MucC low > 76
Escherichia coli BL21 0.88 ECD_03046 transcript cleavage factor 0.58 ECD_02464 SoxR iron-sulfur cluster reduction factor component 0.70 26
Escherichia fergusonii Becca 0.88 EFB2_00642 Transcription elongation factor GreA 0.57 EFB2_01326 Protein RseC low > 86
Escherichia coli ECRC99 0.88 KEDOAH_10105 greA transcription elongation factor GreA 0.58 KEDOAH_06830 rseC SoxR-reducing system protein RseC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_00519 Transcription elongation factor GreA 0.58 OHPLBJKB_01137 Protein RseC low > 73
Escherichia coli ECRC101 0.88 OKFHMN_18045 greA transcription elongation factor GreA 0.58 OKFHMN_21395 rseC SoxR-reducing system protein RseC — —
Escherichia coli BW25113 0.88 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.58 b2570 rseC RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) 0.26 69
Escherichia coli ECRC62 0.88 BNILDI_01690 greA transcription elongation factor GreA 0.58 BNILDI_11870 rseC SoxR-reducing system protein RseC — —
Escherichia coli ECRC102 0.88 NIAGMN_15805 greA transcription elongation factor GreA 0.58 NIAGMN_19165 rseC SoxR-reducing system protein RseC — —
Escherichia coli Nissle 1917 0.88 ECOLIN_RS18320 transcription elongation factor GreA 0.58 ECOLIN_RS14545 SoxR-reducing system protein RseC — —
Escherichia coli ECRC101 0.88 MCAODC_08565 greA transcription elongation factor GreA 0.58 MCAODC_11925 rseC SoxR-reducing system protein RseC — —
Escherichia coli ECRC98 0.88 JDDGAC_21670 greA transcription elongation factor GreA 0.58 JDDGAC_25060 rseC SoxR-reducing system protein RseC — —
Escherichia coli ECOR38 0.88 HEPCGN_16920 greA transcription elongation factor GreA 0.57 HEPCGN_20540 rseC SoxR-reducing system protein RseC — —
Escherichia coli ECOR27 0.88 NOLOHH_09845 greA transcription elongation factor GreA 0.58 NOLOHH_13070 rseC SoxR-reducing system protein RseC — —
Enterobacter sp. TBS_079 0.88 MPMX20_04085 Transcription elongation factor GreA 0.55 MPMX20_03441 Protein RseC low > 85
Pectobacterium carotovorum WPP14 0.88 HER17_RS18330 transcription elongation factor GreA 0.53 HER17_RS05795 SoxR-reducing system protein RseC — —
Dickeya dadantii 3937 0.87 DDA3937_RS03015 transcription elongation factor GreA 0.46 DDA3937_RS15750 SoxR-reducing system protein RseC — —
Pantoea sp. MT58 0.86 IAI47_17080 transcription elongation factor GreA 0.55 IAI47_04865 SoxR-reducing system protein RseC low > 76
Dickeya dianthicola ME23 0.86 DZA65_RS03180 transcription elongation factor GreA 0.43 DZA65_RS16915 SoxR-reducing system protein RseC — —
Dickeya dianthicola 67-19 0.86 HGI48_RS03185 transcription elongation factor GreA 0.44 HGI48_RS15835 SoxR-reducing system protein RseC — —
Erwinia tracheiphila SCR3 0.79 LU632_RS21165 greA transcription elongation factor GreA 0.47 LU632_RS15410 rseC SoxR-reducing system protein RseC — —
Alteromonas macleodii MIT1002 0.74 MIT1002_01468 Transcript cleavage factor GreA 0.21 MIT1002_02716 Sigma-E factor regulatory protein RseC low > 70
Shewanella oneidensis MR-1 0.72 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.23 SO1345 rseC sigma-E factor regulatory protein RseC (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.70 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.17 Sama_0877 sigma-E factor regulatory protein RseC (RefSeq) — —
Kangiella aquimarina DSM 16071 0.69 B158DRAFT_0617 transcription elongation factor GreA 0.23 B158DRAFT_2182 positive regulator of sigma(E), RseC/MucC low > 40
Shewanella loihica PV-4 0.69 Shew_2837 transcription elongation factor GreA (RefSeq) 0.19 Shew_1051 positive regulator of sigma E, RseC/MucC (RefSeq) — —
Marinobacter adhaerens HP15 0.64 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.20 HP15_778 positive regulator of sigma E, RseC/MucC — —
Pseudomonas stutzeri RCH2 0.61 Psest_0969 transcription elongation factor GreA 0.19 Psest_3097 Positive regulator of sigma E activity — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_03330 transcription elongation factor GreA 0.16 CSW01_12470 transcriptional regulator — —

Not shown: 65 genomes with orthologs for IAI46_01880 only; 0 genomes with orthologs for IAI46_19570 only