Conservation of cofitness between HSERO_RS16570 and HSERO_RS11360 in Herbaspirillum seropedicae SmR1

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16570 membrane protein 1.0 HSERO_RS11360 DNA ligase 0.29 16
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_22925 histidine kinase 0.42 AO356_26950 ATP-dependent DNA ligase low > 104
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_467 Sensory box/GGDEF family protein 0.42 Pf6N2E2_1216 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 103
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS22465 membrane protein 0.38 RR42_RS37085 ATP-dependent DNA ligase low > 128
Pseudomonas sp. RS175 0.63 PFR28_02457 putative signaling protein 0.41 PFR28_02106 Multifunctional non-homologous end joining protein LigD low > 88
Ralstonia solanacearum PSI07 0.62 RPSI07_RS21500 bifunctional diguanylate cyclase/phosphodiesterase 0.42 RPSI07_RS21105 DNA ligase D low > 81
Pseudomonas simiae WCS417 0.62 PS417_12760 histidine kinase 0.41 PS417_13125 ATP-dependent DNA ligase low > 88
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS13445 bifunctional diguanylate cyclase/phosphodiesterase 0.41 PFLU_RS14185 DNA ligase D low > 109
Pseudomonas fluorescens SBW25 0.62 PFLU_RS13445 bifunctional diguanylate cyclase/phosphodiesterase 0.41 PFLU_RS14185 DNA ligase D low > 109
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4670 Sensory box/GGDEF family protein 0.42 Pf1N1B4_4314 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 87
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS07670 bifunctional diguanylate cyclase/phosphodiesterase 0.42 ABZR87_RS08115 DNA ligase D low > 80
Pseudomonas putida KT2440 0.61 PP_3581 conserved membrane protein of unknown function 0.42 PP_3260 DNA ligase D low > 96
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS30355 bifunctional diguanylate cyclase/phosphodiesterase 0.41 QEN71_RS22145 DNA ligase D low > 153
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_2486 diguanylate cyclase/phosphodiesterase 0.40 Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_2486 diguanylate cyclase/phosphodiesterase 0.40 Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module low > 86
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.2826.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.33 Xcc-8004.2247.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 74
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS29225 diguanylate phosphodiesterase 0.40 BPHYT_RS09215 ATP-dependent DNA ligase low > 109
Paraburkholderia graminis OAS925 0.39 ABIE53_005195 diguanylate cyclase (GGDEF)-like protein 0.41 ABIE53_002080 bifunctional non-homologous end joining protein LigD low > 113
Variovorax sp. SCN45 0.38 GFF3184 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.39 GFF6242 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 127
Pseudomonas sp. S08-1 0.32 OH686_19830 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.41 OH686_01425 DNA ligase D low > 80
Rhizobium sp. OAE497 0.25 ABIE40_RS13060 bifunctional diguanylate cyclase/phosphodiesterase 0.40 ABIE40_RS26435 DNA ligase D low > 107

Not shown: 12 genomes with orthologs for HSERO_RS16570 only; 12 genomes with orthologs for HSERO_RS11360 only