Conservation of cofitness between HER17_RS07710 and HER17_RS19990 in Pectobacterium carotovorum WPP14

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS07710 UvrY/SirA/GacA family response regulator transcription factor 1.0 HER17_RS19990 outer membrane-stress sensor serine endopeptidase DegS 0.68 17
Dickeya dianthicola ME23 0.92 DZA65_RS14290 UvrY/SirA/GacA family response regulator transcription factor 0.65 DZA65_RS01580 outer membrane-stress sensor serine endopeptidase DegS low > 75
Dickeya dianthicola 67-19 0.91 HGI48_RS13800 UvrY/SirA/GacA family response regulator transcription factor 0.65 HGI48_RS01515 outer membrane-stress sensor serine endopeptidase DegS low > 71
Dickeya dadantii 3937 0.91 DDA3937_RS13705 UvrY/SirA/GacA family response regulator transcription factor 0.65 DDA3937_RS01600 outer membrane-stress sensor serine endopeptidase DegS low > 74
Serratia liquefaciens MT49 0.88 IAI46_09205 UvrY/SirA/GacA family response regulator transcription factor 0.58 IAI46_22395 outer membrane-stress sensor serine endopeptidase DegS — —
Rahnella sp. WP5 0.87 EX31_RS24145 UvrY/SirA/GacA family response regulator transcription factor 0.61 EX31_RS12470 outer membrane-stress sensor serine endopeptidase DegS — —
Pantoea sp. MT58 0.86 IAI47_12470 UvrY/SirA/GacA family response regulator transcription factor 0.59 IAI47_17265 outer membrane-stress sensor serine endopeptidase DegS — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF1699 BarA-associated response regulator UvrY (= GacA = SirA) 0.57 GFF2975 Outer membrane stress sensor protease DegS — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.84 OHPLBJKB_01815 Response regulator UvrY 0.57 OHPLBJKB_00469 Serine endoprotease DegS — —
Escherichia coli BW25113 0.84 b1914 uvrY response regulator (NCBI) 0.57 b3235 degS serine endoprotease, periplasmic (NCBI) — —
Escherichia coli Nissle 1917 0.84 ECOLIN_RS10900 UvrY/SirA/GacA family response regulator transcription factor 0.59 ECOLIN_RS18550 outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia fergusonii Becca 0.84 EFB2_02032 Response regulator UvrY 0.59 EFB2_00595 Serine endoprotease DegS low > 86
Escherichia coli ECRC100 0.84 OKFHMN_25820 uvrC excinuclease ABC subunit UvrC 0.57 OKFHMN_17800 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECRC99 0.84 KEDOAH_02270 uvrC excinuclease ABC subunit UvrC 0.57 KEDOAH_10350 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECOR27 0.84 NOLOHH_16440 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.57 NOLOHH_09600 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECRC101 0.84 MCAODC_19570 uvrC excinuclease ABC subunit UvrC 0.57 MCAODC_08320 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECRC102 0.84 NIAGMN_02230 uvrC excinuclease ABC subunit UvrC 0.57 NIAGMN_15560 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECRC98 0.84 JDDGAC_00410 uvrC excinuclease ABC subunit UvrC 0.57 JDDGAC_21425 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECRC62 0.84 BNILDI_15230 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.58 BNILDI_01935 degS outer membrane-stress sensor serine endopeptidase DegS — —
Escherichia coli ECOR38 0.84 HEPCGN_04175 uvrC excinuclease ABC subunit UvrC 0.57 HEPCGN_16670 degS outer membrane-stress sensor serine endopeptidase DegS low > 87
Enterobacter sp. TBS_079 0.83 MPMX20_02839 Response regulator UvrY 0.58 MPMX20_04139 Serine endoprotease DegS — —
Enterobacter asburiae PDN3 0.83 EX28DRAFT_0633 two component transcriptional regulator, LuxR family 0.55 EX28DRAFT_3284 periplasmic serine pepetdase DegS — —
Erwinia tracheiphila SCR3 0.83 LU632_RS10190 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.53 LU632_RS21360 degS outer membrane-stress sensor serine endopeptidase DegS — —
Klebsiella michiganensis M5al 0.82 BWI76_RS18335 DNA-binding response regulator 0.57 BWI76_RS25370 outer membrane-stress sensor serine endopeptidase DegS — —
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_06135 two-component system response regulator UvrY 0.43 CSW01_03015 outer membrane-stress sensor serine endopeptidase DegS — —
Shewanella sp. ANA-3 0.68 Shewana3_1608 response regulator (RefSeq) 0.37 Shewana3_0689 DegS serine peptidase (RefSeq) low > 73
Shewanella loihica PV-4 0.68 Shew_1824 response regulator (RefSeq) 0.38 Shew_3297 periplasmic serine protease DegS (RefSeq) — —
Shewanella oneidensis MR-1 0.67 SO1860 DNA-binding response regulator, LuxR family (NCBI ptt file) 0.37 SO3943 degS protease DegS (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.63 Sama_1607 response regulator (RefSeq) 0.36 Sama_3074 protease DegS (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.53 MIT1002_02154 Response regulator UvrY 0.34 MIT1002_00841 Serine endoprotease DegS precursor — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS02715 response regulator 0.30 ABZR86_RS09885 trypsin-like peptidase domain-containing protein low > 74

Not shown: 50 genomes with orthologs for HER17_RS07710 only; 1 genomes with orthologs for HER17_RS19990 only