Conservation of cofitness between HER17_RS08615 and HER17_RS12305 in Pectobacterium carotovorum WPP14

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS12305 formate C-acetyltransferase 0.83 6
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.91 EX31_RS18270 formate C-acetyltransferase low > 89
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.95 DZA65_RS09975 formate C-acetyltransferase low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.96 HGI48_RS09665 formate C-acetyltransferase low > 71
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.96 DDA3937_RS09655 formate C-acetyltransferase low > 74
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.92 IAI46_08610 formate C-acetyltransferase low > 86
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.93 BWI76_RS09735 formate acetyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.94 GFF3660 Pyruvate formate-lyase (EC 2.3.1.54) low > 78
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.93 EX28DRAFT_2032 formate acetyltransferase 1 low > 76
Pantoea sp. MT58 0.82 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 IAI47_12880 formate C-acetyltransferase low > 76
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 BNILDI_20325 pflB formate C-acetyltransferase low > 75
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.93 ECD_00907 formate C-acetyltransferase 1, anaerobic; pyruvate formate-lyase 1 low > 61
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 JDDGAC_09120 pflB formate C-acetyltransferase low > 86
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.93 b0903 pflB pyruvate formate lyase I (NCBI) low > 76
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 KEDOAH_22225 pflB formate C-acetyltransferase — —
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 MCAODC_24900 pflB formate C-acetyltransferase low > 87
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.93 EFB2_03161 Formate acetyltransferase 1 low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.93 OHPLBJKB_02765 Formate acetyltransferase 1 low > 73
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 HEPCGN_23010 pflB formate C-acetyltransferase low > 87
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 NOLOHH_22070 pflB formate C-acetyltransferase low > 75
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 OKFHMN_05510 pflB formate C-acetyltransferase low > 80
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 NIAGMN_03230 pflB formate C-acetyltransferase — —
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 ECOLIN_RS17925 2-ketobutyrate formate-lyase/pyruvate formate-lyase low > 55
Enterobacter sp. TBS_079 0.80 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.93 MPMX20_01562 Formate acetyltransferase 1 low > 85
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.92 LU632_RS09775 pflB formate C-acetyltransferase low > 74
Shewanella loihica PV-4 0.64 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.83 Shew_2390 formate acetyltransferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.64 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.82 Shewana3_1555 formate acetyltransferase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.84 CSW01_09350 formate C-acetyltransferase low > 62
Shewanella amazonensis SB2B 0.62 Sama_1988 pseudouridylate synthase (RefSeq) 0.81 Sama_1498 formate C-acetyltransferase (RefSeq) low > 62
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.65 MPMX19_04845 Formate acetyltransferase low > 112
Rhodospirillum rubrum S1H 0.24 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.62 Rru_A3000 Formate acetyltransferase (NCBI) — —
Azospirillum brasilense Sp245 0.24 AZOBR_RS06905 pseudouridine synthase 0.63 AZOBR_RS30195 formate acetyltransferase low > 97

Not shown: 51 genomes with orthologs for HER17_RS08615 only; 9 genomes with orthologs for HER17_RS12305 only