Conservation of cofitness between HER17_RS13490 and HER17_RS10865 in Pectobacterium carotovorum WPP14

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS13490 NAD-dependent malic enzyme 1.0 HER17_RS10865 dipeptide/tripeptide permease DtpA 0.68 8
Serratia liquefaciens MT49 0.88 IAI46_07935 NAD-dependent malic enzyme 0.79 IAI46_11450 dipeptide/tripeptide permease DtpA low > 86
Rahnella sp. WP5 0.86 EX31_RS18665 NAD-dependent malic enzyme 0.77 EX31_RS15730 dipeptide/tripeptide permease DtpA low > 89
Pantoea sp. MT58 0.82 IAI47_06755 NAD-dependent malic enzyme 0.75 IAI47_10500 dipeptide/tripeptide permease DtpA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2556 NAD-dependent malic enzyme (EC 1.1.1.38) 0.78 GFF3640 Di/tripeptide permease DtpA low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_02238 NAD-dependent malic enzyme 0.76 OHPLBJKB_02091 Dipeptide and tripeptide permease A low > 73
Escherichia coli ECRC62 0.77 BNILDI_17520 maeA malate dehydrogenase 0.76 BNILDI_16825 dtpA dipeptide/tripeptide permease DtpA low > 75
Escherichia coli ECOR27 0.77 NOLOHH_19035 maeA malate dehydrogenase 0.76 NOLOHH_18035 dtpA dipeptide/tripeptide permease DtpA low > 75
Escherichia coli BW25113 0.77 b1479 sfcA NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) 0.76 b1634 tppB putative tripeptide transporter permease (NCBI) low > 76
Escherichia coli BL21 0.77 ECD_01437 malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme 0.76 ECD_01604 dipeptide and tripeptide permease A — —
Enterobacter sp. TBS_079 0.77 MPMX20_02369 NAD-dependent malic enzyme 0.79 MPMX20_02004 Dipeptide and tripeptide permease A low > 85
Enterobacter asburiae PDN3 0.77 EX28DRAFT_1103 Malic enzyme 0.79 EX28DRAFT_1630 amino acid/peptide transporter (Peptide:H+ symporter), bacterial low > 76
Escherichia fergusonii Becca 0.77 EFB2_02512 NAD-dependent malic enzyme 0.76 EFB2_02358 Dipeptide and tripeptide permease A low > 86
Escherichia coli ECOR38 0.77 HEPCGN_26435 maeA malate dehydrogenase 0.76 HEPCGN_05900 dtpA dipeptide/tripeptide permease DtpA low > 87
Escherichia coli Nissle 1917 0.77 ECOLIN_RS08525 malate dehydrogenase 0.76 ECOLIN_RS09120 dipeptide/tripeptide permease DtpA — —
Klebsiella michiganensis M5al 0.77 BWI76_RS13830 NAD-dependent malic enzyme 0.78 BWI76_RS16390 dipeptide/tripeptide permease A low > 92
Escherichia coli ECRC102 0.77 NIAGMN_25490 maeA malate dehydrogenase 0.76 NIAGMN_00550 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECRC99 0.77 KEDOAH_27080 maeA malate dehydrogenase 0.76 KEDOAH_00590 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECRC101 0.77 MCAODC_16580 maeA malate dehydrogenase 0.76 MCAODC_17895 dtpA dipeptide/tripeptide permease DtpA low > 87
Escherichia coli ECRC100 0.77 OKFHMN_01360 maeA malate dehydrogenase 0.76 OKFHMN_27515 dtpA dipeptide/tripeptide permease DtpA low > 80
Escherichia coli ECRC98 0.77 JDDGAC_03850 maeA malate dehydrogenase 0.76 JDDGAC_02105 dtpA dipeptide/tripeptide permease DtpA low > 86
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_06015 NAD-dependent malic enzyme 0.56 CSW01_05045 dipeptide/tripeptide permease DtpA low > 62
Shewanella sp. ANA-3 0.69 Shewana3_0750 malate dehydrogenase (RefSeq) 0.33 Shewana3_3089 amino acid/peptide transporter (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO3855 sfcA malate oxidoreductase (NCBI ptt file) 0.33 SO1277 proton-dependent oligopeptide transporter (POT) family protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.69 Sama_2621 malate dehydrogenase (RefSeq) 0.34 Sama_1177 proton-dependent oligopeptide transporter (POT) family protein (RefSeq) low > 62
Shewanella loihica PV-4 0.68 Shew_2962 malate dehydrogenase (RefSeq) 0.19 Shew_1397 amino acid/peptide transporter (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.64 MIT1002_00455 NAD-dependent malic enzyme 0.17 MIT1002_00972 Di-/tripeptide transporter low > 70
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_00026 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.33 H281DRAFT_03131 proton-dependent oligopeptide transporter, POT family low > 103

Not shown: 10 genomes with orthologs for HER17_RS13490 only; 21 genomes with orthologs for HER17_RS10865 only