Conservation of cofitness between HER17_RS12035 and HER17_RS05100 in Pectobacterium carotovorum WPP14

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12035 MBL fold metallo-hydrolase 1.0 HER17_RS05100 S-ribosylhomocysteine lyase 0.62 7
Serratia liquefaciens MT49 0.81 IAI46_08745 MBL fold metallo-hydrolase 0.92 IAI46_03900 S-ribosylhomocysteine lyase low > 86
Dickeya dadantii 3937 0.78 DDA3937_RS12920 MBL fold metallo-hydrolase 0.93 DDA3937_RS16190 S-ribosylhomocysteine lyase low > 74
Dickeya dianthicola 67-19 0.78 HGI48_RS12995 MBL fold metallo-hydrolase 0.92 HGI48_RS16300 S-ribosylhomocysteine lyase low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS13455 MBL fold metallo-hydrolase 0.92 DZA65_RS17395 S-ribosylhomocysteine lyase low > 75
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2009 Zn-dependent hydrolases, including glyoxylases 0.85 EX28DRAFT_2772 S-ribosylhomocysteine lyase (EC 4.4.1.21)/quorum-sensing autoinducer 2 (AI-2) synthesis protein LuxS low > 76
Enterobacter sp. TBS_079 0.77 MPMX20_01585 Hydroxyacylglutathione hydrolase GloC 0.85 MPMX20_03567 S-ribosylhomocysteine lyase low > 85
Escherichia coli ECRC62 0.77 BNILDI_20205 gloC hydroxyacylglutathione hydrolase GloC 0.85 BNILDI_11170 luxS S-ribosylhomocysteine lyase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_02740 Hydroxyacylglutathione hydrolase GloC 0.85 OHPLBJKB_01046 S-ribosylhomocysteine lyase low > 73
Escherichia coli ECOR27 0.77 NOLOHH_21950 gloC hydroxyacylglutathione hydrolase GloC 0.85 NOLOHH_12610 luxS S-ribosylhomocysteine lyase low > 75
Escherichia coli BW25113 0.76 b0927 ycbL predicted metal-binding enzyme (NCBI) 0.85 b2687 luxS S-ribosylhomocysteinase (NCBI) low > 76
Escherichia coli BL21 0.76 ECD_00931 putative metal-binding enzyme 0.85 ECD_02542 S-ribosylhomocysteine lyase low > 61
Escherichia coli ECOR38 0.76 HEPCGN_23135 gloC hydroxyacylglutathione hydrolase GloC 0.85 HEPCGN_19965 luxS S-ribosylhomocysteine lyase low > 87
Escherichia coli ECRC101 0.76 MCAODC_24780 gloC hydroxyacylglutathione hydrolase GloC 0.85 MCAODC_11295 luxS S-ribosylhomocysteine lyase low > 87
Escherichia coli ECRC99 0.76 KEDOAH_22345 gloC hydroxyacylglutathione hydrolase GloC 0.85 KEDOAH_07365 luxS S-ribosylhomocysteine lyase — —
Escherichia coli Nissle 1917 0.76 ECOLIN_RS04905 hydroxyacylglutathione hydrolase GloC 0.85 ECOLIN_RS14985 S-ribosylhomocysteine lyase low > 55
Escherichia coli ECRC100 0.76 OKFHMN_05390 gloC hydroxyacylglutathione hydrolase GloC 0.85 OKFHMN_20770 luxS S-ribosylhomocysteine lyase low > 80
Escherichia fergusonii Becca 0.76 EFB2_03137 Hydroxyacylglutathione hydrolase GloC 0.85 EFB2_01239 S-ribosylhomocysteine lyase low > 86
Escherichia coli ECRC102 0.76 NIAGMN_03110 gloC hydroxyacylglutathione hydrolase GloC 0.85 NIAGMN_18540 luxS S-ribosylhomocysteine lyase — —
Escherichia coli ECRC98 0.76 JDDGAC_09000 gloC hydroxyacylglutathione hydrolase GloC 0.85 JDDGAC_24435 luxS S-ribosylhomocysteine lyase low > 86
Klebsiella michiganensis M5al 0.76 BWI76_RS09865 MBL fold hydrolase 0.87 BWI76_RS22115 S-ribosylhomocysteine lyase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3684 Hypothetical metal-binding enzyme, YcbL homolog 0.86 GFF1596 S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS low > 78
Rahnella sp. WP5 0.73 EX31_RS18150 MBL fold metallo-hydrolase 0.94 EX31_RS07745 S-ribosylhomocysteine lyase low > 89
Pantoea sp. MT58 0.72 IAI47_12770 MBL fold metallo-hydrolase 0.85 IAI47_04355 S-ribosylhomocysteine lyase low > 76
Erwinia tracheiphila SCR3 0.66 LU632_RS09895 MBL fold metallo-hydrolase 0.87 LU632_RS15685 luxS S-ribosylhomocysteine lyase low > 74
Shewanella amazonensis SB2B 0.62 Sama_2142 metallo-beta-lactamase family protein (RefSeq) 0.76 Sama_2541 S-ribosylhomocysteinase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.61 SO3054 metallo-beta-lactamase family protein (NCBI ptt file) 0.75 SO1101 luxS autoinducer-2 production protein LuxS (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.61 Shewana3_1493 beta-lactamase domain-containing protein (RefSeq) 0.75 Shewana3_0936 S-ribosylhomocysteinase (RefSeq) low > 73
Shewanella loihica PV-4 0.60 Shew_2269 beta-lactamase domain-containing protein (RefSeq) 0.75 Shew_2882 S-ribosylhomocysteinase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_06415 MBL fold metallo-hydrolase 0.74 CSW01_02975 S-ribosylhomocysteine lyase low > 62
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS18785 MBL fold metallo-hydrolase 0.17 HMPREF1058_RS09995 S-ribosylhomocysteine lyase low > 67
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS16810 MBL fold metallo-hydrolase 0.17 HMPREF1181_RS01210 S-ribosylhomocysteine lyase low > 56
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS15105 MBL fold metallo-hydrolase 0.17 ABI39_RS06905 S-ribosylhomocysteine lyase low > 72
Fusobacterium nucleatum SB010 0.20 HUW76_06550 MBL fold metallo-hydrolase 0.20 HUW76_05995 S-ribosylhomocysteine lyase low > 35

Not shown: 50 genomes with orthologs for HER17_RS12035 only; 5 genomes with orthologs for HER17_RS05100 only