Conservation of cofitness between HER17_RS07710 and HER17_RS02585 in Pectobacterium carotovorum WPP14

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS07710 UvrY/SirA/GacA family response regulator transcription factor 1.0 HER17_RS02585 RNA chaperone Hfq 0.74 6
Dickeya dianthicola ME23 0.92 DZA65_RS14290 UvrY/SirA/GacA family response regulator transcription factor 0.87 DZA65_RS19680 RNA chaperone Hfq low > 75
Dickeya dianthicola 67-19 0.91 HGI48_RS13800 UvrY/SirA/GacA family response regulator transcription factor 0.87 HGI48_RS18545 RNA chaperone Hfq low > 71
Dickeya dadantii 3937 0.91 DDA3937_RS13705 UvrY/SirA/GacA family response regulator transcription factor 0.83 DDA3937_RS18610 RNA chaperone Hfq low > 74
Serratia liquefaciens MT49 0.88 IAI46_09205 UvrY/SirA/GacA family response regulator transcription factor 0.85 IAI46_01625 RNA chaperone Hfq 0.75 14
Rahnella sp. WP5 0.87 EX31_RS24145 UvrY/SirA/GacA family response regulator transcription factor 0.87 EX31_RS08820 RNA chaperone Hfq low > 89
Pantoea sp. MT58 0.86 IAI47_12470 UvrY/SirA/GacA family response regulator transcription factor 0.77 IAI47_02590 RNA chaperone Hfq low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF1699 BarA-associated response regulator UvrY (= GacA = SirA) 0.84 GFF825 RNA-binding protein Hfq low > 78
Escherichia fergusonii Becca 0.84 EFB2_02032 Response regulator UvrY 0.84 EFB2_04363 RNA-binding protein Hfq 0.58 41
Escherichia coli Nissle 1917 0.84 ECOLIN_RS10900 UvrY/SirA/GacA family response regulator transcription factor 0.84 ECOLIN_RS24230 RNA chaperone Hfq — —
Escherichia coli BW25113 0.84 b1914 uvrY response regulator (NCBI) 0.84 b4172 hfq RNA-binding protein Hfq (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.84 OHPLBJKB_01815 Response regulator UvrY 0.84 OHPLBJKB_03870 RNA-binding protein Hfq low > 73
Escherichia coli ECRC62 0.84 BNILDI_15230 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.84 BNILDI_06970 hfq RNA chaperone Hfq low > 75
Escherichia coli ECRC102 0.84 NIAGMN_02230 uvrC excinuclease ABC subunit UvrC 0.84 NIAGMN_10105 hfq RNA chaperone Hfq — —
Escherichia coli ECOR27 0.84 NOLOHH_16440 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.84 NOLOHH_04520 hfq RNA chaperone Hfq low > 75
Escherichia coli ECRC101 0.84 MCAODC_19570 uvrC excinuclease ABC subunit UvrC 0.84 MCAODC_02770 hfq RNA chaperone Hfq 0.56 7
Escherichia coli ECRC98 0.84 JDDGAC_00410 uvrC excinuclease ABC subunit UvrC 0.84 JDDGAC_15895 hfq RNA chaperone Hfq 0.82 2
Escherichia coli ECRC99 0.84 KEDOAH_02270 uvrC excinuclease ABC subunit UvrC 0.84 KEDOAH_15900 hfq RNA chaperone Hfq — —
Escherichia coli ECRC100 0.84 OKFHMN_25820 uvrC excinuclease ABC subunit UvrC 0.84 OKFHMN_12255 hfq RNA chaperone Hfq low > 80
Escherichia coli ECOR38 0.84 HEPCGN_04175 uvrC excinuclease ABC subunit UvrC 0.84 HEPCGN_10485 hfq RNA chaperone Hfq low > 87
Enterobacter asburiae PDN3 0.83 EX28DRAFT_0633 two component transcriptional regulator, LuxR family 0.81 EX28DRAFT_3369 RNA chaperone Hfq low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_02839 Response regulator UvrY 0.81 MPMX20_00453 RNA-binding protein Hfq low > 85
Erwinia tracheiphila SCR3 0.83 LU632_RS10190 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.83 LU632_RS02055 hfq RNA chaperone Hfq — —
Klebsiella michiganensis M5al 0.82 BWI76_RS18335 DNA-binding response regulator 0.82 BWI76_RS02535 RNA-binding protein Hfq — —
Shewanella loihica PV-4 0.68 Shew_1824 response regulator (RefSeq) 0.71 Shew_0566 RNA chaperone Hfq (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_1607 response regulator (RefSeq) 0.70 Sama_3025 host factor-I protein (RefSeq) — —
Pseudomonas putida KT2440 0.55 PP_4099 two-componenent system BarA/UvrY - regulatory subunit 0.62 PP_4894 RNA-binding protein Hfq — —
Alteromonas macleodii MIT1002 0.53 MIT1002_02154 Response regulator UvrY 0.67 MIT1002_03788 Host factor-I protein low > 70
Rhodanobacter denitrificans MT42 0.39 LRK55_RS17740 response regulator 0.62 LRK55_RS00400 RNA chaperone Hfq low > 63
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.2612.1 BarA-associated response regulator UvrY (= GacA = SirA) 0.65 Xcc-8004.3120.1 RNA-binding protein Hfq low > 74
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_07415 DNA-binding response regulator 0.63 OKGIIK_06630 hfq RNA chaperone Hfq low > 52
Lysobacter sp. OAE881 0.37 ABIE51_RS11810 response regulator 0.63 ABIE51_RS06540 RNA chaperone Hfq low > 62
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS17520 response regulator 0.64 LRK54_RS00630 RNA chaperone Hfq low > 59

Not shown: 48 genomes with orthologs for HER17_RS07710 only; 1 genomes with orthologs for HER17_RS02585 only