Conservation of cofitness between HER17_RS11645 and HER17_RS00500 in Pectobacterium carotovorum WPP14

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS11645 two-component system sensor histidine kinase PhoQ 1.0 HER17_RS00500 high-affinity branched-chain amino acid ABC transporter permease LivH 0.91 10
Dickeya dadantii 3937 0.77 DDA3937_RS11505 two-component system sensor histidine kinase PhoQ 0.97 DDA3937_RS00665 high-affinity branched-chain amino acid ABC transporter permease LivH low > 74
Dickeya dianthicola 67-19 0.76 HGI48_RS11550 two-component system sensor histidine kinase PhoQ 0.97 HGI48_RS20725 high-affinity branched-chain amino acid ABC transporter permease LivH low > 71
Dickeya dianthicola ME23 0.76 DZA65_RS11885 two-component system sensor histidine kinase PhoQ 0.97 DZA65_RS21735 high-affinity branched-chain amino acid ABC transporter permease LivH low > 75
Serratia liquefaciens MT49 0.68 IAI46_10390 two-component system sensor histidine kinase PhoQ 0.95 IAI46_00965 high-affinity branched-chain amino acid ABC transporter permease LivH low > 86
Rahnella sp. WP5 0.67 EX31_RS24555 two-component system sensor histidine kinase PhoQ 0.93 EX31_RS14800 high-affinity branched-chain amino acid ABC transporter permease LivH low > 89
Pantoea sp. MT58 0.64 IAI47_11935 two-component system sensor histidine kinase PhoQ 0.90 IAI47_01570 high-affinity branched-chain amino acid ABC transporter permease LivH low > 76
Erwinia tracheiphila SCR3 0.63 LU632_RS14595 phoQ two-component system sensor histidine kinase PhoQ 0.89 LU632_RS19250 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3414 Sensor protein PhoQ (EC 2.7.13.3) 0.88 GFF549 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) low > 78
Escherichia coli BL21 0.61 ECD_01127 sensory histidine kinase in two-component regulatory system with PhoP 0.88 ECD_03306 branched-chain amino acid ABC transporter permease — —
Escherichia coli Nissle 1917 0.61 ECOLIN_RS06605 two-component system sensor histidine kinase PhoQ 0.88 ECOLIN_RS19770 high-affinity branched-chain amino acid ABC transporter permease LivH low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_02539 Sensor protein PhoQ 0.88 OHPLBJKB_00246 High-affinity branched-chain amino acid transport system permease protein LivH low > 73
Escherichia coli ECOR27 0.61 NOLOHH_20920 phoQ two-component system sensor histidine kinase PhoQ 0.88 NOLOHH_08540 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 75
Escherichia coli BW25113 0.61 b1129 phoQ sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) 0.88 b3457 livH leucine/isoleucine/valine transporter subunit (NCBI) low > 76
Escherichia coli ECRC62 0.61 BNILDI_19085 phoQ two-component system sensor histidine kinase PhoQ 0.88 BNILDI_02965 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 75
Escherichia coli ECOR38 0.61 HEPCGN_24195 phoQ two-component system sensor histidine kinase PhoQ 0.88 HEPCGN_15565 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 87
Escherichia fergusonii Becca 0.61 EFB2_02846 Sensor protein PhoQ 0.88 EFB2_00365 High-affinity branched-chain amino acid transport system permease protein LivH low > 86
Enterobacter asburiae PDN3 0.61 EX28DRAFT_1801 Signal transduction histidine kinase 0.89 EX28DRAFT_4289 Branched-chain amino acid ABC-type transport system, permease components low > 76
Escherichia coli ECRC101 0.61 MCAODC_22360 phoQ two-component system sensor histidine kinase PhoQ 0.88 MCAODC_07275 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 87
Escherichia coli ECRC99 0.61 KEDOAH_24810 phoQ two-component system sensor histidine kinase PhoQ 0.88 KEDOAH_11395 livH high-affinity branched-chain amino acid ABC transporter permease LivH — —
Escherichia coli ECRC102 0.61 NIAGMN_24870 phoQ two-component system sensor histidine kinase PhoQ 0.88 NIAGMN_14515 livH high-affinity branched-chain amino acid ABC transporter permease LivH — —
Escherichia coli ECRC98 0.61 JDDGAC_06640 phoQ two-component system sensor histidine kinase PhoQ 0.88 JDDGAC_20375 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 86
Escherichia coli ECRC100 0.61 OKFHMN_00725 phoQ two-component system sensor histidine kinase PhoQ 0.88 OKFHMN_16745 livH high-affinity branched-chain amino acid ABC transporter permease LivH low > 80
Klebsiella michiganensis M5al 0.60 BWI76_RS11275 sensor protein PhoQ 0.88 BWI76_RS26345 branched-chain amino acid ABC transporter permease LivH low > 92
Enterobacter sp. TBS_079 0.60 MPMX20_01810 Virulence sensor histidine kinase PhoQ 0.88 MPMX20_04333 High-affinity branched-chain amino acid transport system permease protein LivH low > 85
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_3484 Sensor protein PhoQ (EC 2.7.13.3) 0.63 Pf1N1B4_3217 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) low > 87
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_2012 Sensor protein PhoQ (EC 2.7.13.3) 0.63 PfGW456L13_4608 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) low > 87
Pseudomonas sp. RS175 0.22 PFR28_03243 Virulence sensor histidine kinase PhoQ 0.64 PFR28_00539 High-affinity branched-chain amino acid transport system permease protein LivH low > 88
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_02810 histidine kinase 0.62 AO353_17120 branched-chain amino acid transporter permease subunit LivH low > 101
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_5705 Sensor protein PhoQ (EC 2.7.13.3) 0.64 Pf6N2E2_2923 ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) low > 103
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_18970 histidine kinase 0.64 AO356_05325 branched-chain amino acid transporter permease subunit LivH low > 104
Pseudomonas stutzeri RCH2 0.21 Psest_3884 Signal transduction histidine kinase 0.67 Psest_1311 Branched-chain amino acid ABC-type transport system, permease components low > 67
Pseudomonas putida KT2440 0.20 PP_1187 sensor protein 0.63 PP_1140 branched chain amino acid transporter - permease subunit low > 96
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS23125 HAMP domain-containing protein 0.63 PFLU_RS06640 high-affinity branched-chain amino acid ABC transporter permease LivH low > 109
Pseudomonas fluorescens SBW25 0.18 PFLU_RS23125 HAMP domain-containing protein 0.63 PFLU_RS06640 high-affinity branched-chain amino acid ABC transporter permease LivH low > 109
Pseudomonas simiae WCS417 0.18 PS417_21510 histidine kinase 0.63 PS417_06610 branched-chain amino acid transporter permease subunit LivH — —

Not shown: 0 genomes with orthologs for HER17_RS11645 only; 38 genomes with orthologs for HER17_RS00500 only