Conservation of cofitness between GFF3622 and GFF4579 in Hydrogenophaga sp. GW460-11-11-14-LB1

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup 1.0 GFF4579 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.45 17
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_2329 Endoribonuclease L-PSP 0.52 PfGW456L13_2253 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 87
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_179 Endoribonuclease L-PSP 0.53 Pf1N1B4_260 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) — —
Rhodopseudomonas palustris CGA009 0.32 TX73_018610 RidA family protein 0.51 TX73_021075 peptide-methionine (R)-S-oxide reductase MsrB low > 86
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_0208 endoribonuclease L-PSP 0.54 Psyr_3614 Protein of unknown function DUF25 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_0208 endoribonuclease L-PSP 0.54 Psyr_3614 Protein of unknown function DUF25 low > 86
Escherichia coli ECRC62 0.28 BNILDI_01325 tdcF enamine/imine deaminase 0.41 BNILDI_16050 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia coli ECRC102 0.28 NIAGMN_16185 tdcF enamine/imine deaminase 0.41 NIAGMN_01330 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia coli BW25113 0.28 b3113 yhaR orf, hypothetical protein (VIMSS) 0.41 b1778 yeaA methionine sulfoxide reductase B (NCBI) low > 76
Escherichia coli ECRC99 0.28 KEDOAH_09725 tdcF enamine/imine deaminase 0.41 KEDOAH_01375 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia coli ECRC101 0.28 MCAODC_08935 tdcF enamine/imine deaminase 0.41 MCAODC_18675 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia fergusonii Becca 0.28 EFB2_00701 Putative reactive intermediate deaminase TdcF 0.41 EFB2_02216 Peptide methionine sulfoxide reductase MsrB low > 86
Escherichia coli Nissle 1917 0.28 ECOLIN_RS17920 enamine/imine deaminase 0.41 ECOLIN_RS09915 peptide-methionine (R)-S-oxide reductase MsrB — —
Escherichia coli BL21 0.28 ECD_02980 putative reactive intermediate deaminase 0.41 ECD_01747 methionine sulfoxide reductase B low > 60
Escherichia coli ECOR38 0.28 HEPCGN_17255 tdcF enamine/imine deaminase 0.41 HEPCGN_05125 msrB Peptide methionine sulfoxide reductase MsrB low > 85
Escherichia coli ECOR27 0.28 NOLOHH_10200 tdcF enamine/imine deaminase 0.41 NOLOHH_17265 msrB Peptide methionine sulfoxide reductase MsrB low > 57
Escherichia coli ECRC98 0.28 JDDGAC_22055 tdcF enamine/imine deaminase 0.41 JDDGAC_01310 msrB Peptide methionine sulfoxide reductase MsrB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF 0.41 OHPLBJKB_01954 Peptide methionine sulfoxide reductase MsrB low > 73
Escherichia coli ECRC101 0.28 OKFHMN_18420 tdcF enamine/imine deaminase 0.41 OKFHMN_26735 msrB Peptide methionine sulfoxide reductase MsrB — —
Acinetobacter radioresistens SK82 0.28 MPMX26_01719 Putative aminoacrylate peracid reductase RutC 0.47 MPMX26_01870 Peptide methionine sulfoxide reductase MsrB — —
Pseudomonas sp. S08-1 0.27 OH686_13545 RidA/YER057c/UK114 superfamily protein 0.44 OH686_22580 Peptide-methionine (R)-S-oxide reductase MsrB low > 80
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS29515 RidA family protein 0.52 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB low > 109
Pseudomonas simiae WCS417 0.27 PS417_27835 endoribonuclease 0.52 PS417_08565 peptide methionine sulfoxide reductase low > 88
Pseudomonas fluorescens SBW25 0.27 PFLU_RS29515 RidA family protein 0.52 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF928 Endoribonuclease L-PSP 0.42 GFF3479 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 78
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_09285 reactive intermediate/imine deaminase 0.51 AO353_19155 peptide methionine sulfoxide reductase low > 101
Pseudomonas sp. RS175 0.27 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase 0.52 PFR28_00985 Peptide methionine sulfoxide reductase MsrB low > 88
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_05869 2-iminobutanoate/2-iminopropanoate deaminase 0.57 H281DRAFT_00913 peptide-methionine (R)-S-oxide reductase low > 103
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_12475 reactive intermediate/imine deaminase 0.53 AO356_03085 peptide methionine sulfoxide reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.53 Pf6N2E2_2445 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) low > 103
Castellaniella sp019104865 MT123 0.26 ABCV34_RS03565 Rid family detoxifying hydrolase 0.51 ABCV34_RS08520 peptide-methionine (R)-S-oxide reductase MsrB — —
Pseudomonas putida KT2440 0.26 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.53 PP_1873 Peptide methionine sulfoxide reductase MsrB low > 96
Pseudomonas stutzeri RCH2 0.25 Psest_3818 endoribonuclease L-PSP, putative 0.48 Psest_1773 methionine-R-sulfoxide reductase low > 67

Not shown: 44 genomes with orthologs for GFF3622 only; 15 genomes with orthologs for GFF4579 only