Conservation of cofitness between PS417_04020 and PS417_21515 in Pseudomonas simiae WCS417

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04020 glycine/betaine ABC transporter substrate-binding protein 1.0 PS417_21515 transcriptional regulator 0.22 11
Pseudomonas fluorescens SBW25 0.96 PFLU_RS04060 glycine betaine ABC transporter substrate-binding protein 0.99 PFLU_RS23130 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS04060 glycine betaine ABC transporter substrate-binding protein 0.99 PFLU_RS23130 response regulator transcription factor low > 109
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_5063 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation 0.93 PfGW456L13_2011 Transcriptional regulatory protein PhoP low > 87
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_05430 glycine/betaine ABC transporter substrate-binding protein 0.96 AO353_02815 transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_1132 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation 0.95 Pf1N1B4_3483 Transcriptional regulatory protein PhoP low > 87
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_3331 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation 0.94 Pf6N2E2_5704 Transcriptional regulatory protein PhoP low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_07295 glycine/betaine ABC transporter substrate-binding protein 0.93 AO356_18965 transcriptional regulator low > 104
Pseudomonas sp. RS175 0.82 PFR28_00116 Osmoprotectant-binding protein OsmX 0.91 PFR28_03244 Transcriptional regulatory protein PhoP low > 88
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_4251 Substrate-binding region of ABC-type glycine betaine transport system 0.89 Psyr_3709 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_4251 Substrate-binding region of ABC-type glycine betaine transport system 0.89 Psyr_3709 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.38 64
Pseudomonas putida KT2440 0.70 PP_0870 putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein 0.88 PP_1186 two component system DNA-binding transcriptional dual regulator low > 96
Pantoea sp. MT58 0.41 IAI47_09775 glycine betaine ABC transporter substrate-binding protein 0.48 IAI47_11930 two-component system response regulator PhoP low > 76
Enterobacter sp. TBS_079 0.41 MPMX20_02068 Osmoprotectant-binding protein OsmX 0.49 MPMX20_01811 Transcriptional regulatory protein PhoP low > 85
Enterobacter asburiae PDN3 0.40 EX28DRAFT_1488 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 0.49 EX28DRAFT_1800 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF1780 Putative ABC transporter periplasmic binding protein 0.51 GFF3415 Transcriptional regulatory protein PhoP low > 78
Erwinia tracheiphila SCR3 0.32 LU632_RS12285 glycine/betaine ABC transporter substrate-binding protein 0.47 LU632_RS14590 phoP two-component system response regulator PhoP low > 74
Escherichia coli ECRC98 0.22 JDDGAC_27615 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.49 JDDGAC_06635 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC101 0.22 OKFHMN_23660 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.49 OKFHMN_00730 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC101 0.22 MCAODC_14710 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.49 MCAODC_22355 phoP two-component system response regulator PhoP — —
Escherichia coli ECOR38 0.22 HEPCGN_02235 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.50 HEPCGN_24200 phoP two-component system response regulator PhoP low > 85
Escherichia coli ECRC102 0.22 NIAGMN_21425 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.49 NIAGMN_24875 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC99 0.22 KEDOAH_04525 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.49 KEDOAH_24815 phoP two-component system response regulator PhoP — —
Escherichia coli BL21 0.22 ECD_02061 putative ABC transporter periplasmic binding protein 0.50 ECD_01128 response regulator in two-component regulatory system with PhoQ — —
Escherichia coli BW25113 0.22 b2131 yehZ predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) 0.50 b1130 phoP DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) low > 76
Escherichia coli ECOR27 0.22 NOLOHH_15200 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.50 NOLOHH_20915 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC62 0.22 BNILDI_14150 osmF glycine betaine ABC transporter substrate-binding protein OsmF 0.50 BNILDI_19080 phoP two-component system response regulator PhoP — —
Escherichia fergusonii Becca 0.22 EFB2_01724 Glycine betaine-binding protein YehZ 0.50 EFB2_02845 Transcriptional regulatory protein PhoP low > 86
Escherichia coli Nissle 1917 0.21 ECOLIN_RS25495 glycine betaine ABC transporter substrate-binding protein OsmF 0.50 ECOLIN_RS06610 two-component system response regulator PhoP — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_01579 Glycine betaine-binding protein YehZ 0.50 OHPLBJKB_02538 Transcriptional regulatory protein PhoP low > 73
Klebsiella michiganensis M5al 0.21 BWI76_RS19505 ABC transporter substrate-binding protein 0.51 BWI76_RS11280 two-component system response regulator PhoP — —
Rahnella sp. WP5 0.20 EX31_RS23935 ABC transporter substrate-binding protein 0.51 EX31_RS24560 two-component system response regulator PhoP low > 89
Serratia liquefaciens MT49 0.20 IAI46_07365 ABC transporter substrate-binding protein 0.50 IAI46_10395 two-component system response regulator PhoP low > 86

Not shown: 13 genomes with orthologs for PS417_04020 only; 19 genomes with orthologs for PS417_21515 only