Conservation of cofitness between GFF4863 and GFF3834 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 1.0 GFF3834 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.58 2
Escherichia coli ECRC102 0.96 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.92 NIAGMN_22020 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC101 0.96 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.92 MCAODC_21085 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 87
Escherichia coli BW25113 0.96 b2806 ygdE predicted methyltransferase (NCBI) 0.91 b2103 thiD phosphomethylpyrimidine kinase (NCBI) low > 76
Escherichia coli BL21 0.96 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent 0.91 ECD_02031 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.96 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M 0.91 OHPLBJKB_01607 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 73
Escherichia coli ECOR38 0.96 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.90 HEPCGN_02760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 87
Escherichia coli ECRC98 0.96 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.92 JDDGAC_28185 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 86
Escherichia coli ECOR27 0.96 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.91 NOLOHH_15415 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Escherichia coli ECRC99 0.96 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.92 KEDOAH_04075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia coli ECRC62 0.96 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.91 BNILDI_14330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Escherichia coli ECRC100 0.96 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.92 OKFHMN_24075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 80
Escherichia coli Nissle 1917 0.96 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.90 ECOLIN_RS12335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase — —
Escherichia fergusonii Becca 0.96 EFB2_01111 Ribosomal RNA large subunit methyltransferase M 0.91 EFB2_01754 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 86
Enterobacter sp. TBS_079 0.93 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M 0.86 MPMX20_03076 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS22945 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.90 BWI76_RS19375 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 92
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase 0.87 EX28DRAFT_0469 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Pantoea sp. MT58 0.80 IAI47_04035 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.76 IAI47_06810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 76
Pectobacterium carotovorum WPP14 0.79 HER17_RS16405 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.78 HER17_RS06265 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Serratia liquefaciens MT49 0.79 IAI46_20330 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.75 IAI46_19100 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 86
Erwinia tracheiphila SCR3 0.77 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.77 LU632_RS08590 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 74
Rahnella sp. WP5 0.77 EX31_RS13100 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.75 EX31_RS20390 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 89
Dickeya dianthicola ME23 0.77 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.73 DZA65_RS16235 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.74 HGI48_RS15410 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 71
Dickeya dadantii 3937 0.77 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.75 DDA3937_RS15335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase low > 74
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_3403 conserved hypothetical protein 0.21 Psyr_4340 phosphomethylpyrimidine kinase, putative low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_3403 conserved hypothetical protein 0.21 Psyr_4340 phosphomethylpyrimidine kinase, putative low > 86
Pseudomonas putida KT2440 0.45 PP_2113 Ribosomal RNA large subunit methyltransferase M 0.21 PP_4782 Phosphomethylpyrimidine kinase low > 96
Pseudomonas stutzeri RCH2 0.43 Psest_2520 Predicted SAM-dependent methyltransferase 0.20 Psest_0537 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase low > 67
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_2300 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.17 Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 103
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_02380 23S rRNA methyltransferase 0.21 AO356_15435 hydrogenase low > 104
Pseudomonas sp. RS175 0.43 PFR28_01100 Ribosomal RNA large subunit methyltransferase M 0.19 PFR28_03843 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.32 9
Pseudomonas simiae WCS417 0.43 PS417_07520 23S rRNA methyltransferase 0.22 PS417_24600 hydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_3890 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.17 Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_00560 23S rRNA methyltransferase 0.21 AO353_06350 hydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_4051 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.21 PfGW456L13_1385 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) low > 87

Not shown: 12 genomes with orthologs for GFF4863 only; 51 genomes with orthologs for GFF3834 only