Conservation of cofitness between GFF4838 and GFF3747 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 GFF3747 FIG001881: hydrolase of alkaline phosphatase superfamily 0.60 9
Escherichia coli BW25113 0.86 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.89 b2188 yejM predicted hydrolase, inner membrane (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.86 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 OHPLBJKB_01521 Inner membrane protein YejM low > 73
Escherichia coli ECRC62 0.86 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 BNILDI_13830 yejM LPS biosynthesis-modulating metalloenzyme YejM low > 75
Escherichia coli BL21 0.86 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.89 ECD_02118 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor low > 61
Escherichia coli ECOR38 0.86 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 HEPCGN_22600 yejM LPS biosynthesis-modulating metalloenzyme YejM low > 87
Escherichia coli ECOR27 0.86 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 NOLOHH_14910 yejM LPS biosynthesis-modulating metalloenzyme YejM low > 75
Escherichia coli Nissle 1917 0.86 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 ECOLIN_RS12785 LPS biosynthesis-modulating metalloenzyme YejM — —
Escherichia coli ECRC101 0.85 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 MCAODC_14385 yejM LPS biosynthesis-modulating metalloenzyme YejM low > 87
Escherichia coli ECRC100 0.85 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 OKFHMN_23335 yejM LPS biosynthesis-modulating metalloenzyme YejM low > 80
Escherichia coli ECRC99 0.85 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 KEDOAH_04850 yejM LPS biosynthesis-modulating metalloenzyme YejM — —
Escherichia coli ECRC98 0.85 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 JDDGAC_27295 yejM LPS biosynthesis-modulating metalloenzyme YejM low > 86
Escherichia coli ECRC102 0.85 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 NIAGMN_21100 yejM LPS biosynthesis-modulating metalloenzyme YejM — —
Escherichia fergusonii Becca 0.85 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 EFB2_01668 Inner membrane protein YejM low > 86
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.87 EX28DRAFT_0373 Predicted hydrolase of alkaline phosphatase superfamily low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.86 MPMX20_03154 Inner membrane protein YejM low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.83 BWI76_RS19845 phosphatase low > 92
Pectobacterium carotovorum WPP14 0.63 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 HER17_RS12985 LPS biosynthesis-modulating metalloenzyme YejM low > 75
Dickeya dadantii 3937 0.63 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 DDA3937_RS09115 DUF3413 domain-containing protein low > 74
Dickeya dianthicola 67-19 0.63 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.62 HGI48_RS09155 DUF3413 domain-containing protein low > 71
Rahnella sp. WP5 0.63 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 EX31_RS19220 DUF3413 domain-containing protein low > 89
Serratia liquefaciens MT49 0.62 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 IAI46_17370 DUF3413 domain-containing protein low > 86
Dickeya dianthicola ME23 0.62 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.62 DZA65_RS09455 DUF3413 domain-containing protein low > 75
Pantoea sp. MT58 0.62 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 IAI47_06560 DUF3413 domain-containing protein low > 76
Erwinia tracheiphila SCR3 0.58 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 LU632_RS17620 yejM LPS biosynthesis-modulating metalloenzyme YejM — —
Shewanella amazonensis SB2B 0.46 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.20 Sama_1555 hypothetical protein (RefSeq) 0.47 8
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 CSW01_10200 DUF3413 domain-containing protein low > 62
Shewanella loihica PV-4 0.43 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.23 Shew_1470 sulfatase (RefSeq) 0.44 38
Shewanella sp. ANA-3 0.42 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.24 Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.42 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.24 SO2175 conserved hypothetical protein (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.33 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.12 ABIE51_RS08280 sulfatase-like hydrolase/transferase low > 62
Alteromonas macleodii MIT1002 0.32 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.12 MIT1002_01981 Inner membrane protein YejM low > 70

Not shown: 66 genomes with orthologs for GFF4838 only; 0 genomes with orthologs for GFF3747 only