Conservation of cofitness between PS417_04525 and PS417_14965 in Pseudomonas simiae WCS417

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04525 16S rRNA methyltransferase 1.0 PS417_14965 transcriptional regulator 0.28 8
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS04570 class I SAM-dependent methyltransferase 0.97 PFLU_RS16995 response regulator low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS04570 class I SAM-dependent methyltransferase 0.97 PFLU_RS16995 response regulator low > 109
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_14995 16S rRNA methyltransferase 0.88 AO353_22960 transcriptional regulator low > 101
Shewanella loihica PV-4 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.47 Shew_0896 two component transcriptional regulator (RefSeq) low > 60
Shewanella sp. ANA-3 0.29 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.47 Shewana3_3184 two component transcriptional regulator (RefSeq) 0.68 15
Erwinia tracheiphila SCR3 0.29 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 LU632_RS11455 rstA two-component system response regulator RstA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.42 GFF1800 Transcriptional regulatory protein RstA low > 78
Pantoea sp. MT58 0.28 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.43 IAI47_09545 two-component system response regulator RstA low > 76
Serratia liquefaciens MT49 0.28 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.43 IAI46_13300 two-component system response regulator RstA low > 86
Shewanella oneidensis MR-1 0.28 SO0828 conserved hypothetical protein (NCBI ptt file) 0.47 SO3594 transcriptional regulatory protein RstA, putative (NCBI ptt file) low > 76
Escherichia coli BL21 0.28 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.44 ECD_01577 response regulator of RstAB two-component system low > 60
Escherichia coli BW25113 0.28 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.44 b1608 rstA DNA-binding response regulator in two-component regulatory system with RstB (RefSeq) low > 76
Escherichia coli Nissle 1917 0.28 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 ECOLIN_RS08980 two-component system response regulator RstA — —
Dickeya dadantii 3937 0.27 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.47 DDA3937_RS12230 two-component system response regulator RstA low > 74
Escherichia coli ECRC99 0.27 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 KEDOAH_00440 rstA two-component system response regulator RstA — —
Escherichia coli ECRC102 0.27 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 NIAGMN_00410 rstA two-component system response regulator RstA — —
Escherichia coli ECRC101 0.27 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 OKFHMN_27665 rstA two-component system response regulator RstA — —
Escherichia fergusonii Becca 0.27 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.44 EFB2_02384 Transcriptional regulatory protein RstA low > 86
Enterobacter asburiae PDN3 0.27 EX28DRAFT_3579 16S RNA G1207 methylase RsmC 0.43 EX28DRAFT_1549 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Escherichia coli ECOR27 0.27 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 NOLOHH_18170 rstA two-component system response regulator RstA — —
Escherichia coli ECOR38 0.27 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 HEPCGN_06040 rstA two-component system response regulator RstA low > 85
Escherichia coli ECRC101 0.27 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 MCAODC_17745 rstA two-component system response regulator RstA — —
Escherichia coli ECRC98 0.27 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 JDDGAC_02255 rstA two-component system response regulator RstA — —
Klebsiella michiganensis M5al 0.27 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.42 BWI76_RS16250 DNA-binding response regulator low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.44 OHPLBJKB_02118 Transcriptional regulatory protein RstA low > 73
Escherichia coli ECRC62 0.27 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 BNILDI_16960 rstA two-component system response regulator RstA — —
Enterobacter sp. TBS_079 0.27 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C 0.42 MPMX20_02026 Transcriptional regulatory protein RstA low > 85
Dickeya dianthicola ME23 0.26 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.47 DZA65_RS12760 two-component system response regulator RstA low > 75
Shewanella amazonensis SB2B 0.26 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.45 Sama_2800 response regulator receiver protein (RefSeq) low > 62
Dickeya dianthicola 67-19 0.26 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.47 HGI48_RS12320 two-component system response regulator RstA low > 71
Rahnella sp. WP5 0.26 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.43 EX31_RS06520 two-component system response regulator RstA low > 89
Pectobacterium carotovorum WPP14 0.25 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.45 HER17_RS09695 two-component system response regulator RstA low > 75

Not shown: 13 genomes with orthologs for PS417_04525 only; 0 genomes with orthologs for PS417_14965 only