Conservation of cofitness between GFF4271 and GFF2827 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4271 Penicillin-binding protein AmpH 1.0 GFF2827 Hypothetical nudix hydrolase YeaB 0.46 4
Escherichia fergusonii Becca 0.93 EFB2_03681 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.82 EFB2_02187 putative Nudix hydrolase NudL low > 86
Escherichia coli Nissle 1917 0.93 ECOLIN_RS02290 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.82 ECOLIN_RS10085 CoA pyrophosphatase — —
Escherichia coli ECOR38 0.93 HEPCGN_07305 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.82 HEPCGN_04945 nudL CoA pyrophosphatase low > 88
Escherichia coli ECRC100 0.93 OKFHMN_08665 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.82 OKFHMN_26555 nudL CoA pyrophosphatase low > 79
Escherichia coli ECRC101 0.93 MCAODC_27890 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 MCAODC_18855 nudL CoA pyrophosphatase low > 88
Escherichia coli ECRC102 0.93 NIAGMN_06720 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 NIAGMN_01510 nudL CoA pyrophosphatase low > 80
Escherichia coli ECRC99 0.93 KEDOAH_19305 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 KEDOAH_01555 nudL CoA pyrophosphatase — —
Escherichia coli ECOR27 0.93 NOLOHH_01590 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 NOLOHH_17075 nudL CoA pyrophosphatase low > 76
Escherichia coli ECRC98 0.93 JDDGAC_12320 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 JDDGAC_01130 nudL CoA pyrophosphatase low > 87
Escherichia coli ECRC62 0.93 BNILDI_23000 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 BNILDI_15860 nudL CoA pyrophosphatase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_03299 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.82 OHPLBJKB_01918 putative Nudix hydrolase NudL low > 74
Escherichia coli BW25113 0.93 b0376 ampH beta-lactamase/D-alanine carboxypeptidase (NCBI) 0.82 b1813 yeaB predicted NUDIX hydrolase (NCBI) low > 76
Escherichia coli BL21 0.92 ECD_00323 D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase 0.81 ECD_01783 putative CoA pyrophosphohydrolase, weak 3-phosphohydroxypyruvate phosphatase — —
Klebsiella michiganensis M5al 0.88 BWI76_RS06095 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.82 BWI76_RS17870 coenzyme A pyrophosphatase low > 92
Enterobacter sp. TBS_079 0.87 MPMX20_00963 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.84 MPMX20_02718 putative Nudix hydrolase NudL low > 85
Enterobacter asburiae PDN3 0.87 EX28DRAFT_2598 Beta-lactamase class C and other penicillin binding proteins 0.84 EX28DRAFT_0746 NUDIX domain low > 76
Klebsiella pneumoniae MKP103 0.85 KDGMDA_14190 D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.83 KDGMDA_25155 CoA pyrophosphatase low > 95
Pantoea sp. MT58 0.74 IAI47_05345 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.59 IAI47_08790 CoA pyrophosphatase low > 76
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS19890 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.59 PagCFBP13505_RS02620 CoA pyrophosphatase low > 74
Erwinia amylovora T8 0.67 OLJFJH_07570 D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.61 OLJFJH_13060 CoA pyrophosphatase low > 58
Serratia liquefaciens MT49 0.61 IAI46_02780 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.60 IAI46_14790 CoA pyrophosphatase low > 86
Rahnella sp. WP5 0.60 EX31_RS04370 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.59 EX31_RS24720 CoA pyrophosphatase low > 89
Pseudomonas fluorescens FW300-N2E2 0.10 Pf6N2E2_2130 Beta-lactamase (EC 3.5.2.6) 0.33 Pf6N2E2_5437 Hypothetical nudix hydrolase YeaB low > 103
Pseudomonas fluorescens FW300-N2C3 0.09 AO356_01295 class C beta-lactamase 0.33 AO356_17570 DNA mismatch repair protein MutT 0.21 62
Rhizobium sp. OAE497 0.08 ABIE40_RS05500 class C beta-lactamase 0.30 ABIE40_RS13245 CoA pyrophosphatase low > 107
Pseudomonas segetis P6 0.08 MPMX49_01917 Beta-lactamase 0.33 MPMX49_01561 putative Nudix hydrolase NudL low > 75
Pseudomonas lactucae CFBP13502 0.08 GEMAOFIL_03296 Beta-lactamase 0.33 GEMAOFIL_04746 putative Nudix hydrolase NudL low > 93
Dickeya dianthicola ME23 0.07 DZA65_RS21670 serine hydrolase 0.55 DZA65_RS11640 CoA pyrophosphatase low > 75
Pseudomonas fluorescens SBW25-INTG 0.07 PFLU_RS16915 class C beta-lactamase 0.33 PFLU_RS24625 CoA pyrophosphatase low > 109
Pseudomonas fluorescens SBW25 0.07 PFLU_RS16915 class C beta-lactamase 0.33 PFLU_RS24625 CoA pyrophosphatase low > 109
Acinetobacter baumannii LAC-4 0.07 RR41_RS05565 ADC family extended-spectrum class C beta-lactamase 0.28 RR41_RS15780 CoA pyrophosphatase low > 55
Pseudomonas fluorescens FW300-N1B4 0.07 Pf1N1B4_73 Beta-lactamase (EC 3.5.2.6) 0.33 Pf1N1B4_883 Hypothetical nudix hydrolase YeaB low > 87
Dickeya dianthicola 67-19 0.07 HGI48_RS20655 serine hydrolase 0.57 HGI48_RS11295 CoA pyrophosphatase low > 71
Pseudomonas fluorescens GW456-L13 0.07 PfGW456L13_2479 Beta-lactamase (EC 3.5.2.6) 0.34 PfGW456L13_4826 Hypothetical nudix hydrolase YeaB low > 87
Shewanella oneidensis MR-1 0.07 SO2388 beta-lactamase (NCBI ptt file) 0.33 SO2220 MutT/nudix family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.07 Shewana3_1990 ampC beta-lactamase (RefSeq) 0.33 Shewana3_2304 NUDIX hydrolase (RefSeq) — —

Not shown: 4 genomes with orthologs for GFF4271 only; 26 genomes with orthologs for GFF2827 only