Conservation of cofitness between GFF4068 and GFF1358 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4068 IcmF-related protein 1.0 GFF1358 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) 0.57 13
Enterobacter sp. TBS_079 0.21 MPMX20_02678 hypothetical protein 0.94 MPMX20_00235 Methionine synthase low > 85
Enterobacter asburiae PDN3 0.21 EX28DRAFT_0790 type VI secretion protein IcmF 0.95 EX28DRAFT_4326 methionine synthase (B12-dependent) (EC 2.1.1.13) 0.64 15
Pantoea sp. MT58 0.20 IAI47_11680 type VI secretion system membrane subunit TssM 0.87 IAI47_17990 methionine synthase low > 76
Pseudomonas fluorescens SBW25 0.18 PFLU_RS29600 type VI secretion system membrane subunit TssM 0.66 PFLU_RS13000 methionine synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS29600 type VI secretion system membrane subunit TssM 0.66 PFLU_RS13000 methionine synthase low > 109
Pseudomonas simiae WCS417 0.18 PS417_27920 type VI secretion protein IcmF 0.66 PS417_12310 methionine synthase low > 88
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_2070 IcmF-related protein 0.66 Pf1N1B4_5661 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 87
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_12315 type VI secretion protein IcmF 0.66 AO356_00545 methionine synthase low > 104
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_09545 type VI secretion protein IcmF 0.66 AO353_21615 methionine synthase low > 101
Pseudomonas sp. RS175 0.17 PFR28_04450 hypothetical protein 0.66 PFR28_01369 Methionine synthase low > 88
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_4341 IcmF-related protein 0.66 Pf6N2E2_2068 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) low > 103
Agrobacterium fabrum C58 0.15 Atu4332 IcmF family protein 0.60 Atu2155 methionine synthase low > 89
Pseudomonas sp. S08-1 0.12 OH686_12780 T6SS component TssM (IcmF/VasK) 0.66 OH686_03335 methionine synthase low > 80
Pseudomonas stutzeri RCH2 0.11 Psest_4246 type VI secretion protein IcmF 0.66 Psest_2102 5-methyltetrahydrofolate--homocysteine methyltransferase low > 67
Vibrio cholerae E7946 ATCC 55056 0.11 CSW01_14615 type VI secretion system membrane subunit TssM 0.76 CSW01_02060 methionine synthase low > 62
Acinetobacter radioresistens SK82 0.10 MPMX26_00969 hypothetical protein 0.62 MPMX26_02351 Methionine synthase low > 36
Herbaspirillum seropedicae SmR1 0.09 HSERO_RS03785 type VI secretion protein VasK 0.61 HSERO_RS21740 methionine synthase low > 78
Dickeya dadantii 3937 0.09 DDA3937_RS07080 type VI secretion system membrane subunit TssM 0.86 DDA3937_RS19040 methionine synthase low > 74
Dickeya dianthicola ME23 0.09 DZA65_RS08605 type VI secretion system membrane subunit TssM 0.86 DZA65_RS20250 methionine synthase low > 75
Dickeya dianthicola 67-19 0.09 HGI48_RS08010 type VI secretion system membrane subunit TssM 0.86 HGI48_RS19130 methionine synthase low > 71
Marinobacter adhaerens HP15 0.09 HP15_3463 type VI secretion protein IcmF 0.62 HP15_1792 B12-dependent methionine synthase low > 73
Pectobacterium carotovorum WPP14 0.08 HER17_RS04905 type VI secretion system membrane subunit TssM 0.87 HER17_RS02310 methionine synthase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.08 OHPLBJKB_03439 hypothetical protein 0.96 OHPLBJKB_04030 Methionine synthase low > 73
Pseudomonas putida KT2440 0.08 PP_4071 conserved membrane protein of unknown function 0.66 PP_2375 cobalamin-dependent methionine synthase low > 96
Escherichia coli ECRC98 0.08 JDDGAC_13515 tssM type VI secretion system membrane subunit TssM 0.96 JDDGAC_16865 metH methionine synthase low > 86
Escherichia coli ECRC101 0.08 MCAODC_00435 tssM type VI secretion system membrane subunit TssM 0.96 MCAODC_03740 metH methionine synthase low > 87
Escherichia coli ECRC99 0.08 KEDOAH_18235 tssM type VI secretion system membrane subunit TssM 0.96 KEDOAH_14920 metH methionine synthase — —
Escherichia coli ECRC100 0.08 OKFHMN_09920 tssM type VI secretion system membrane subunit TssM 0.96 OKFHMN_13240 metH methionine synthase low > 80
Escherichia coli ECRC102 0.08 NIAGMN_07770 tssM type VI secretion system membrane subunit TssM 0.96 NIAGMN_10990 metH methionine synthase — —
Escherichia coli ECOR27 0.07 NOLOHH_02275 tssM type VI secretion system membrane subunit TssM 0.96 NOLOHH_05380 metH methionine synthase low > 75
Escherichia fergusonii Becca 0.07 EFB2_03823 hypothetical protein 0.95 EFB2_04592 Methionine synthase low > 86

Not shown: 10 genomes with orthologs for GFF4068 only; 31 genomes with orthologs for GFF1358 only