Conservation of cofitness between GFF4401 and GFF1022 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4401 Cys-tRNA(Pro) deacylase YbaK 1.0 GFF1022 FIG001826: putative inner membrane protein 0.47 2
Klebsiella michiganensis M5al 0.93 BWI76_RS06870 aminoacyl-tRNA deacylase 0.90 BWI76_RS04010 hypothetical protein low > 92
Enterobacter sp. TBS_079 0.92 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.92 MPMX20_00656 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.93 EX28DRAFT_3566 Uncharacterized conserved protein low > 76
Escherichia coli Nissle 1917 0.91 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 ECOLIN_RS25040 threonine/serine exporter — —
Escherichia fergusonii Becca 0.91 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.90 EFB2_04085 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.90 OHPLBJKB_03700 hypothetical protein low > 73
Escherichia coli BW25113 0.91 b0481 ybaK hypothetical protein (NCBI) 0.91 b4363 yjjB conserved inner membrane protein (RefSeq) low > 76
Escherichia coli ECRC62 0.91 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 BNILDI_07935 yjjB threonine/serine exporter low > 75
Escherichia coli BL21 0.91 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.91 ECD_04240 DUF3815 family inner membrane protein low > 61
Escherichia coli ECOR38 0.91 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 HEPCGN_09355 yjjB threonine/serine exporter low > 87
Escherichia coli ECOR27 0.91 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 NOLOHH_03665 yjjB threonine/serine exporter low > 75
Escherichia coli ECRC98 0.90 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 JDDGAC_14930 yjjB threonine/serine exporter low > 86
Escherichia coli ECRC101 0.90 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.90 MCAODC_01850 yjjB threonine/serine exporter low > 87
Escherichia coli ECRC102 0.90 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 NIAGMN_09185 yjjB threonine/serine exporter — —
Escherichia coli ECRC100 0.90 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 OKFHMN_11335 yjjB threonine/serine exporter low > 80
Escherichia coli ECRC99 0.90 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.91 KEDOAH_16810 yjjB threonine/serine exporter — —
Serratia liquefaciens MT49 0.79 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.72 IAI46_03220 threonine/serine exporter low > 86
Pectobacterium carotovorum WPP14 0.79 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 HER17_RS02925 threonine/serine exporter low > 75
Rahnella sp. WP5 0.78 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.74 EX31_RS03800 threonine/serine exporter low > 89
Dickeya dadantii 3937 0.69 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.75 DDA3937_RS18290 threonine/serine exporter low > 74
Dickeya dianthicola ME23 0.62 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.75 DZA65_RS19365 threonine/serine exporter low > 75
Dickeya dianthicola 67-19 0.62 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.75 HGI48_RS18225 threonine/serine exporter low > 71
Shewanella sp. ANA-3 0.56 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.46 Shewana3_3215 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.54 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.46 SO3647 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.50 Sama_0531 YbaK/EbsC protein (RefSeq) 0.45 Sama_2825 hypothetical protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_10815 Cys-tRNA(Pro) deacylase 0.60 CSW01_02305 hypothetical protein low > 62
Shewanella loihica PV-4 0.43 Shew_0016 ybaK/ebsC protein (RefSeq) 0.46 Shew_0873 hypothetical protein (RefSeq) — —
Rhodospirillum rubrum S1H 0.33 Rru_A3668 hypothetical protein (NCBI) 0.22 Rru_A2595 hypothetical protein (NCBI) low > 58
Bacteroides thetaiotaomicron VPI-5482 0.32 BT0579 putative transcription regulator (NCBI ptt file) 0.17 BT0974 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) — —

Not shown: 54 genomes with orthologs for GFF4401 only; 1 genomes with orthologs for GFF1022 only