Conservation of cofitness between EX28DRAFT_2079 and EX28DRAFT_4407 in Enterobacter asburiae PDN3

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_2079 type II secretion system protein D 1.0 EX28DRAFT_4407 Transcriptional regulators 0.66 2
Enterobacter sp. TBS_079 0.87 MPMX20_01515 Putative secretin GspD 0.99 MPMX20_04535 HTH-type transcriptional repressor CytR low > 85
Rahnella sp. WP5 0.60 EX31_RS16165 type II secretion system secretin GspD 0.74 EX31_RS14230 DNA-binding transcriptional regulator CytR low > 89
Escherichia coli BW25113 0.54 b3325 yheF putative general protein secretion protein (VIMSS) 0.88 b3934 cytR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00378 Putative type II secretion system protein D 0.88 OHPLBJKB_04117 HTH-type transcriptional repressor CytR low > 73
Escherichia coli Nissle 1917 0.54 ECOLIN_RS19060 type II secretion system secretin GspD 0.88 ECOLIN_RS22650 DNA-binding transcriptional regulator CytR low > 55
Escherichia fergusonii Becca 0.53 EFB2_00498 Putative secretin GspD 0.88 EFB2_04684 HTH-type transcriptional repressor CytR low > 86
Klebsiella michiganensis M5al 0.51 BWI76_RS05090 type II secretion system protein GspD 0.90 BWI76_RS00765 DNA-binding transcriptional regulator CytR low > 92
Pectobacterium carotovorum WPP14 0.50 HER17_RS06685 type II secretion system secretin GspD 0.72 HER17_RS00865 DNA-binding transcriptional regulator CytR low > 75
Escherichia coli ECRC100 0.49 OKFHMN_00285 etpD variant type II secretion system secretin EtpD 0.88 OKFHMN_13725 cytR DNA-binding transcriptional regulator CytR low > 80
Escherichia coli ECRC98 0.49 JDDGAC_30295 etpD variant type II secretion system secretin EtpD 0.88 JDDGAC_17350 cytR DNA-binding transcriptional regulator CytR low > 86
Escherichia coli ECRC102 0.49 NIAGMN_28605 etpD variant type II secretion system secretin EtpD 0.88 NIAGMN_11480 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli ECRC101 0.49 MCAODC_15265 etpD variant type II secretion system secretin EtpD 0.88 MCAODC_04225 cytR DNA-binding transcriptional regulator CytR low > 87
Dickeya dadantii 3937 0.49 DDA3937_RS14800 type II secretion system secretin GspD 0.67 DDA3937_RS00930 DNA-binding transcriptional regulator CytR low > 74
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_13790 type II secretion system protein GspD 0.66 CSW01_13525 DNA-binding transcriptional regulator CytR — —
Alteromonas macleodii MIT1002 0.41 MIT1002_03976 Pullulanase secretion envelope PulD 0.35 MIT1002_00363 HTH-type transcriptional repressor CytR low > 70
Shewanella amazonensis SB2B 0.40 Sama_0169 type II and III secretion system protein (RefSeq) 0.31 Sama_0294 LacI family transcription regulator (RefSeq) low > 62
Escherichia coli ECOR27 0.39 NOLOHH_10975 gspD general secretion pathway protein D 0.88 NOLOHH_05870 cytR DNA-binding transcriptional regulator CytR low > 75
Escherichia coli BL21 0.39 ECD_02838 putative type II secretion protein GspD 0.88 ECD_03819 Anti-activator for CytR-CRP nucleoside utilization regulon low > 61
Escherichia coli ECOR38 0.39 HEPCGN_18050 gspD general secretion pathway protein D 0.88 HEPCGN_12370 cytR DNA-binding transcriptional regulator CytR low > 87
Erwinia tracheiphila SCR3 0.34 LU632_RS25230 gspD type II secretion system secretin GspD 0.71 LU632_RS19660 cytR DNA-binding transcriptional regulator CytR low > 74
Dickeya dianthicola ME23 0.29 DZA65_RS16270 type II secretion system secretin GspD 0.67 DZA65_RS21490 DNA-binding transcriptional regulator CytR low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS15450 type II secretion system secretin GspD 0.67 HGI48_RS20445 DNA-binding transcriptional regulator CytR low > 71
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_09345 type II secretion system protein GspD 0.33 AO356_22285 LacI family transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_651 General secretion pathway protein D 0.33 Pf6N2E2_322 Transcriptional regulator, LacI family low > 103
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00172 type II secretion pathway protein D 0.36 CCNA_01699 LacI-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.19 CCNA_00172 type II secretion pathway protein D 0.36 CCNA_01699 LacI-family transcriptional regulator low > 66
Cupriavidus basilensis FW507-4G11 0.16 RR42_RS19520 general secretion pathway protein GspD 0.23 RR42_RS27820 GntR family transcriptional regulator low > 128
Pseudomonas sp. RS175 0.15 PFR28_01750 Secretin XcpQ 0.33 PFR28_02584 HTH-type transcriptional repressor CytR low > 88
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_3945 type II secretion system protein D 0.32 Ga0059261_0555 transcriptional regulator, LacI family low > 68

Not shown: 24 genomes with orthologs for EX28DRAFT_2079 only; 24 genomes with orthologs for EX28DRAFT_4407 only