Conservation of cofitness between ECD_03636 and ECD_02657 in Escherichia coli BL21

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03636 D-ribose ABC transporter permease 1.0 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent 0.38 61
Escherichia coli ECRC102 1.00 NIAGMN_12495 rbsC ribose ABC transporter permease 1.00 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli BW25113 1.00 b3750 rbsC ribose ABC transporter permease protein (NCBI) 1.00 b2806 ygdE predicted methyltransferase (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21560 ribose ABC transporter permease 1.00 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 55
Escherichia coli ECRC99 1.00 KEDOAH_13410 rbsC ribose ABC transporter permease 1.00 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC62 1.00 BNILDI_04650 rbsC ribose ABC transporter permease 1.00 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04303 Ribose import permease protein RbsC 1.00 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M low > 73
Escherichia coli ECOR27 1.00 NOLOHH_06875 rbsC ribose ABC transporter permease 1.00 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia fergusonii Becca 1.00 EFB2_04883 Ribose import permease protein RbsC 1.00 EFB2_01111 Ribosomal RNA large subunit methyltransferase M low > 86
Escherichia coli ECRC100 1.00 OKFHMN_14740 rbsC ribose ABC transporter permease 1.00 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 80
Escherichia coli ECRC98 1.00 JDDGAC_18360 rbsC ribose ABC transporter permease 1.00 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Escherichia coli ECRC101 1.00 MCAODC_05245 rbsC ribose ABC transporter permease 1.00 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli ECOR38 1.00 HEPCGN_13450 rbsC ribose ABC transporter permease 1.00 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Enterobacter sp. TBS_079 0.93 MPMX20_04617 Ribose import permease protein RbsC 0.93 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_4026 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 0.92 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF1707 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) 0.96 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS00280 ribose ABC transporter permease 0.93 BWI76_RS22945 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 92
Pectobacterium carotovorum WPP14 0.90 HER17_RS21540 ribose ABC transporter permease 0.79 HER17_RS16405 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Dickeya dadantii 3937 0.87 DDA3937_RS00040 ribose ABC transporter permease 0.77 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Dickeya dianthicola 67-19 0.87 HGI48_RS21325 ribose ABC transporter permease 0.78 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 71
Dickeya dianthicola ME23 0.87 DZA65_RS22305 ribose ABC transporter permease 0.78 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Serratia liquefaciens MT49 0.87 IAI46_25065 ribose ABC transporter permease 0.79 IAI46_20330 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Rahnella sp. WP5 0.85 EX31_RS06180 ribose ABC transporter permease 0.79 EX31_RS13100 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 89
Pantoea sp. MT58 0.85 IAI47_00360 ribose ABC transporter permease 0.81 IAI47_04035 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 76
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS19510 sugar ABC transporter permease 0.44 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas simiae WCS417 0.41 PS417_17725 ribose ABC transporter permease 0.44 PS417_07520 23S rRNA methyltransferase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS19510 sugar ABC transporter permease 0.44 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_2570 monosaccharide ABC transporter membrane protein, CUT2 family 0.45 Psyr_3403 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_2570 monosaccharide ABC transporter membrane protein, CUT2 family 0.45 Psyr_3403 conserved hypothetical protein low > 86
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_21390 m-Inositol ABC transporter, permease component (iatP) (from data) 0.42 AO353_00560 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_524 Inositol transport system permease protein 0.44 Pf6N2E2_2300 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 103
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_23210 ABC transporter 0.44 AO356_02380 23S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_4287 Inositol transport system permease protein 0.43 Pf1N1B4_3890 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM — —
Pseudomonas putida KT2440 0.28 PP_2456 D-ribose ABC transporter - permease subunit 0.44 PP_2113 Ribosomal RNA large subunit methyltransferase M low > 96

Not shown: 25 genomes with orthologs for ECD_03636 only; 14 genomes with orthologs for ECD_02657 only